These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [GAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGGACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGATATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAAACCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCCGCGGGCCACCGTCAAGAAGATCAAGAAGGAGTTTACGGTCATCGAGCCCATCGACATCAACACACCAGCCTTACTGGCGCCACAGGCTGGAACAAAGGACAAGATGGCACGGGCGTGGTACAGAAACTTCGGGCAGGTGTCCGTGACAGCG] [+] EMBL BU804602 [GAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGGACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGATATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAAACCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCCGCGGGCCACCGTCAAGAAGATCAAGAAGGAGTTTACGGTCATCGAGCCCATCGACATCAACACACCAGCCTTACTGGCGCCACAGGCTGGAACAAAGGACAAGATGGCACGGGCGTGGTACAGAAACTTCGGGCAGGTGTCCGTGACAGCG] consensusID : consensus_1049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [GTGAGCTCAGACACCAGGAAACTGAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGCACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGAGATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAATCCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGGTCAGTCCGCTCTGCAGGCACGCTGATGGGGGAGACTCCGGTAGACTTGAAGGGGATCAAAAACAACAAAACCAGCGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCC] [+] EMBL BU804718 [GTGAGCTCAGACACCAGGAAACTGAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGCACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGAGATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAATCCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGGTCAGTCCGCTCTGCAGGCACGCTGATGGGGGAGACTCCGGTAGACTTGAAGGGGATCAAAAACAACAAAACCAGCGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1049#0 -----------------------GAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCG 37 consensus_1049#1 GTGAGCTCAGACACCAGGAAACTGAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCG 60 ************************************* consensus_1049#0 GACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACAT 97 consensus_1049#1 CACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACAT 120 *********************************************************** consensus_1049#0 CGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTC 157 consensus_1049#1 CGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTC 180 ************************************************************ consensus_1049#0 GGGCCGGGTGATTCTAGACCTTTTCGGTGATATTCGGTTGAATTCCCTGAAGCTCCACGC 217 consensus_1049#1 GGGCCGGGTGATTCTAGACCTTTTCGGTGAGATTCGGTTGAATTCCCTGAAGCTCCACGC 240 ****************************** ***************************** consensus_1049#0 CGAAGGGTTTGCTAAAGTCCATTGGACGGAAACCCGGTCTGCCGGCTCCAGCACCGCATA 277 consensus_1049#1 CGAAGGGTTTGCTAAAGTCCATTGGACGGAATCCCGGTCTGCCGGCTCCAGCACCGCATA 300 ******************************* **************************** consensus_1049#0 CACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGC 337 consensus_1049#1 CACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGC 360 ************************************************************ consensus_1049#0 AG---------------------------------------------------------- 339 consensus_1049#1 AGGTCAGTCCGCTCTGCAGGCACGCTGATGGGGGAGACTCCGGTAGACTTGAAGGGGATC 420 ** consensus_1049#0 -------------------ATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAA 380 consensus_1049#1 AAAAACAACAAAACCAGCGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAA 480 ***************************************** consensus_1049#0 TTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACAC 440 consensus_1049#1 TTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACAC 540 ************************************************************ consensus_1049#0 GGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCCGCGGGCCACCGTCAAGAAG 500 consensus_1049#1 GGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCC------------------- 581 ***************************************** consensus_1049#0 ATCAAGAAGGAGTTTACGGTCATCGAGCCCATCGACATCAACACACCAGCCTTACTGGCG 560 consensus_1049#1 ------------------------------------------------------------ consensus_1049#0 CCACAGGCTGGAACAAAGGACAAGATGGCACGGGCGTGGTACAGAAACTTCGGGCAGGTG 620 consensus_1049#1 ------------------------------------------------------------ consensus_1049#0 TCCGTGACAGCG 632 consensus_1049#1 ------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |