cluster # 1060

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Takifugu rubripes
cluster # 1060 cluster # 1060 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1060#0 length = 605 sequences # 1

consensus_1060#1 length = 555 sequences # 1

consensusID : consensus_1060#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCATTCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCTATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGGAGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGCTGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGAAGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGGTTCTGCACAGCAACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAACGGAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCGCTGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGGTTCCTG]

[+] EMBL BU804732             [TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCATTCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCTATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGGAGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGCTGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGAAGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGGTTCTGCACAGCAACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAACGGAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCGCTGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGGTTCCTG]




>consensus_1060#0
TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTA
TCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCAT
TCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCT
ATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGG
AGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGC
TGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGA
AGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGG
TTCTGCACAGCAACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAACG
GAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCGC
TGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGGT
TCCTG

consensusID : consensus_1060#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAGCCCAACTTTGGTCCTGCCGGCGGGCCGGGTTTGCGTTCGGCAGCACCGCCAGCAGTTCGACACTGTCGGCCAAGCGTTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAAGTGGCGTTTCGTGCGTGGCTACGGGACTTTTGAACCGTGGGGGGGGCTGTTGCGAAAGTATTAAAACGCGACGGATCCAGTTTGACCAGCACATGCCGATGTTGAAGCTAATCACGTTTAAAACGTCACGTCCACATTGAAAGCTGCTAAACTGCATCAGATGTCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAACTTTATGTAGCTAATGGTAAATCCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAACCTGCTGTCCTGAAACCAGCGGTGTGGAGGACAGGCCTGTGTGGACGCATTCGACGTGAAATCGAAATAATTCTT]

[+] EMBL CA590132             [GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAGCCCAACTTTGGTCCTGCCGGCGGGCCGGGTTTGCGTTCGGCAGCACCGCCAGCAGTTCGACACTGTCGGCCAAGCGTTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAAGTGGCGTTTCGTGCGTGGCTACGGGACTTTTGAACCGTGGGGGGGGCTGTTGCGAAAGTATTAAAACGCGACGGATCCAGTTTGACCAGCACATGCCGATGTTGAAGCTAATCACGTTTAAAACGTCACGTCCACATTGAAAGCTGCTAAACTGCATCAGATGTCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAACTTTATGTAGCTAATGGTAAATCCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAACCTGCTGTCCTGAAACCAGCGGTGTGGAGGACAGGCCTGTGTGGACGCATTCGACGTGAAATCGAAATAATTCTT]




>consensus_1060#1
GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCAC
GTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAGCCCAACTTTGGTCCTG
CCGGCGGGCCGGGTTTGCGTTCGGCAGCACCGCCAGCAGTTCGACACTGTCGGCCAAGCG
TTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAAGTGGCGTTTCGTGCGTGGCTAC
GGGACTTTTGAACCGTGGGGGGGGCTGTTGCGAAAGTATTAAAACGCGACGGATCCAGTT
TGACCAGCACATGCCGATGTTGAAGCTAATCACGTTTAAAACGTCACGTCCACATTGAAA
GCTGCTAAACTGCATCAGATGTCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAAC
TTTATGTAGCTAATGGTAAATCCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAA
CCTGCTGTCCTGAAACCAGCGGTGTGGAGGACAGGCCTGTGTGGACGCATTCGACGTGAA
ATCGAAATAATTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1060#0      TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTA 60
consensus_1060#1      ----------------GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTA 44
                                      ********************************************

consensus_1060#0      TCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCAT 120
consensus_1060#1      TCCAGCTGCGGCTCACGTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAG 104
                      ***************************          *   *   *  *  **     * 

consensus_1060#0      TCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCT 180
consensus_1060#1      CCCAACTTTGGTCCTGCCGGCGGGCC----GGGTTTGCGTTCGG--CAGCACCGCCAGCA 158
                       ***       *  * **     * *    ***     *  * *  **  * *  ** * 

consensus_1060#0      ATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGG 240
consensus_1060#1      GTTCGACACTGTCGGCCAAGCGTTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAA 218
                       * * * *  *     *    *    *  ** *  *  * * ** * *  ** *****  

consensus_1060#0      AGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGC 300
consensus_1060#1      GTGGCG-TTTCGTGCGTGGCTA-----CGGGACTTTTGAACCGTG----GGGGGGGCTGT 268
                           *  ** *    *   **     * *   * * ***  *      *   * *  * 

consensus_1060#0      TGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGA 360
consensus_1060#1      TGCGAAAGTATTAAAACGC-GACG--GATCCAGTTTGACCAGCACATGCCGATGTT--GA 323
                      ** *** *****   *  * ***   **  *  *  **    *  *   *  *  *  **

consensus_1060#0      AGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGG 420
consensus_1060#1      AGCTAATCACGTTTAAA-ACGTCACGTCCACATTGAAAGCTGCTA-AACTGCATCAGATG 381
                      ** * * **  *   *  *** * ****  **   *  **    *      * *  *  *

consensus_1060#0      TTCTGCACAGCA-ACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAAC 479
consensus_1060#1      TCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAACTTTATGTAGCTAATGGTAAAT 441
                      *     *      *  ** **  **   *   *** * ** * ** *   * ***  ** 

consensus_1060#0      GGAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCG 539
consensus_1060#1      CCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAACCTGCTGTCCTGAAACCAGCG 501
                        *     * *    *    * **  *    * ** *           *  *  ** ***

consensus_1060#0      CTGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGG 599
consensus_1060#1      GTGTGGA----GGACAGGCCT-GTGTGGACGCATTCGACGTGAAATCGA--AATAATTCT 554
                       ***  *    ** **  *   * ***  * *  * *  * *   ***     ** **  

consensus_1060#0      TTCCTG 605
consensus_1060#1      T----- 555
                      *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)