These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCATTCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCTATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGGAGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGCTGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGAAGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGGTTCTGCACAGCAACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAACGGAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCGCTGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGGTTCCTG] [+] EMBL BU804732 [TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCATTCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCTATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGGAGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGCTGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGAAGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGGTTCTGCACAGCAACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAACGGAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCGCTGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGGTTCCTG] consensusID : consensus_1060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAGCCCAACTTTGGTCCTGCCGGCGGGCCGGGTTTGCGTTCGGCAGCACCGCCAGCAGTTCGACACTGTCGGCCAAGCGTTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAAGTGGCGTTTCGTGCGTGGCTACGGGACTTTTGAACCGTGGGGGGGGCTGTTGCGAAAGTATTAAAACGCGACGGATCCAGTTTGACCAGCACATGCCGATGTTGAAGCTAATCACGTTTAAAACGTCACGTCCACATTGAAAGCTGCTAAACTGCATCAGATGTCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAACTTTATGTAGCTAATGGTAAATCCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAACCTGCTGTCCTGAAACCAGCGGTGTGGAGGACAGGCCTGTGTGGACGCATTCGACGTGAAATCGAAATAATTCTT] [+] EMBL CA590132 [GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTATCCAGCTGCGGCTCACGTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAGCCCAACTTTGGTCCTGCCGGCGGGCCGGGTTTGCGTTCGGCAGCACCGCCAGCAGTTCGACACTGTCGGCCAAGCGTTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAAGTGGCGTTTCGTGCGTGGCTACGGGACTTTTGAACCGTGGGGGGGGCTGTTGCGAAAGTATTAAAACGCGACGGATCCAGTTTGACCAGCACATGCCGATGTTGAAGCTAATCACGTTTAAAACGTCACGTCCACATTGAAAGCTGCTAAACTGCATCAGATGTCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAACTTTATGTAGCTAATGGTAAATCCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAACCTGCTGTCCTGAAACCAGCGGTGTGGAGGACAGGCCTGTGTGGACGCATTCGACGTGAAATCGAAATAATTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1060#0 TGTTCGCCGTCATGGGGTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTA 60 consensus_1060#1 ----------------GTCGCTGACTGAGAAGCTGCCCTTCGTGGTGTTGGTGTCGTTTA 44 ******************************************** consensus_1060#0 TCCAGCTGCGGCTCACGTTGACGGGAGACTGTCCTGCAGATGGACGAACATGGGTCCCAT 120 consensus_1060#1 TCCAGCTGCGGCTCACGTTGACGGGAGGTGAGAGCCGAACCGAGAGTTCGGGGAGTTAAG 104 *************************** * * * * ** * consensus_1060#0 TCCAGGACAAATGTTACCACTTTGTCCACGGGGCAGAGGACCAGATCAAAAGCTACACCT 180 consensus_1060#1 CCCAACTTTGGTCCTGCCGGCGGGCC----GGGTTTGCGTTCGG--CAGCACCGCCAGCA 158 *** * * ** * * *** * * * ** * * ** * consensus_1060#0 ATGCAAGAGCGAAAAGCCTCTGCCAAGGATTTGAGCTTCTGTCCATCCATAGTGTCCAGG 240 consensus_1060#1 GTTCGACACTGTCGGCCAAGCGTTGCGTGTTGGCCCAGCGGACCTTTCTGAGCGTCCAAA 218 * * * * * * * * ** * * * * ** * * ** ***** consensus_1060#0 AGAATGACTTTGCAATTAAATATAGCCCAGAGGTGTGGAAGGGCACTGTGAACGTGTGGC 300 consensus_1060#1 GTGGCG-TTTCGTGCGTGGCTA-----CGGGACTTTTGAACCGTG----GGGGGGGCTGT 268 * ** * * ** * * * * *** * * * * * consensus_1060#0 TGGGAATGTATTTTGATACAGACAATGACACCATGAGATGGTCGGACAACAGTCCTGTGA 360 consensus_1060#1 TGCGAAAGTATTAAAACGC-GACG--GATCCAGTTTGACCAGCACATGCCGATGTT--GA 323 ** *** ***** * * *** ** * * ** * * * * * ** consensus_1060#0 AGTTCACCAACTGGGAGGACGACTCGTCTCCAGACATCGCGCTCATGGACACGTGTGGGG 420 consensus_1060#1 AGCTAATCACGTTTAAA-ACGTCACGTCCACATTGAAAGCTGCTA-AACTGCATCAGATG 381 ** * * ** * * *** * **** ** * ** * * * * * consensus_1060#0 TTCTGCACAGCA-ACTCCGGGAAGTGGCAGAAGGTCAGCTGTCTGGATGAAGTGGAGAAC 479 consensus_1060#1 TCTGAAATTATGTAAACCAGGTCGTTTGAATGGGTTAACTTTATGTAGCTAATGGTAAAT 441 * * * ** ** ** * *** * ** * ** * * *** ** consensus_1060#0 GGAGTGGTGTGTGAGGCCAAGCAGGAGGCAGAGAAAGCGAAGCGAACGCCCAGCCCGGCG 539 consensus_1060#1 CCATAACAGGGAAGTGATTTGTAGCCGTTTTAAAAGGAACCTGCTGTCCTGAAACCAGCG 501 * * * * * ** * * ** * * * ** *** consensus_1060#0 CTGTCCATCCTGGTCATCCTCAGCGTGATCACTGTTGTTGGGGTCTCGGCTGGTATTTGG 599 consensus_1060#1 GTGTGGA----GGACAGGCCT-GTGTGGACGCATTCGACGTGAAATCGA--AATAATTCT 554 *** * ** ** * * *** * * * * * * *** ** ** consensus_1060#0 TTCCTG 605 consensus_1060#1 T----- 555 * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |