These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTTGATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGACCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTGGCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAATAATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAACATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCCATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAGATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTTGGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATGGATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG] [+] EMBL BU807633 [TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTTGATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGACCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTGGCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAATAATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAACATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCCATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAGATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTTGGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATGGATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG] consensusID : consensus_1064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 171 fasta sequence [ACTCGGGCCTCAGCATCCTCAGCGGGCCGCGGTACTAGGCCGCAACTAGCTTAGCCCAGAAACGGCACAAATACGCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGNNNCATTTGNNNATTAGC] [+] EMBL BU804786 [ACTCGGGCCTCAGCATCCTCAGCGGGCCGCGGTACTAGGCCGCAACTAGCTTAGCCCAGAAACGGCACAAATACGCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGNNNCATTTGNNNATTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1064#0 TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTT 60 consensus_1064#1 --------------------------------------------ACTCGGGCCTCAGCAT 16 * * * * * consensus_1064#0 GATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGA 120 consensus_1064#1 CCTCAGCGGGCCGCG-GTACTAGGCCGCAACT-AGCTTAGCCCAGAAACGGCACAAATAC 74 * ****** ** * ** * ** * * ** * ** * * * consensus_1064#0 CCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTG 180 consensus_1064#1 GCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCACGTT---GACGCTC 131 * * ** * * * * ***** *** * ** *** *** * consensus_1064#0 GCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAAT 240 consensus_1064#1 CGCGGTGGGCGC----CCCTGTCCGGNNNCATTTGNNNATTAGC---------------- 171 ** *** ** * ** *** ** ** ** consensus_1064#0 AATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAAC 300 consensus_1064#1 ------------------------------------------------------------ consensus_1064#0 ATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCC 360 consensus_1064#1 ------------------------------------------------------------ consensus_1064#0 ATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAG 420 consensus_1064#1 ------------------------------------------------------------ consensus_1064#0 ATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTT 480 consensus_1064#1 ------------------------------------------------------------ consensus_1064#0 GGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATG 540 consensus_1064#1 ------------------------------------------------------------ consensus_1064#0 GATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG 600 consensus_1064#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |