cluster # 1095

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Takifugu rubripes
cluster # 1095 cluster # 1095 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1095#0 length = 319 sequences # 1

consensus_1095#1 length = 312 sequences # 1

consensusID : consensus_1095#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TCTACTGACTTACTAGGTGTGAATAAAGGGGAAAAAAAACCTTTAGGCTGCTAATGCATTCTGTCTGAAAGCCCATCTTGGATCCTGATAGACGAGCTTCTCTCTCCAACACGTCAATTCTCATATAGCTCACAGGCTGCCATCTGAATCTGTTGAAACTCACCCTAGAGCAATACAGGCCTTTAATGCTTTGCTCTGACGGAGCCCACAGAGGGATAGTAATACTAGAGCTCCAGATGCGTCTAAAGGATCCCTTCTCTTTAGAAAGCGCCGAAATGACTAAGCGGGCTAACAAACCCAGGAAACCTCGAGATGAGGA]

[+] EMBL FR0060558            [TCTACTGACTTACTAGGTGTGAATAAAGGGGAAAAAAAACCTTTAGGCTGCTAATGCATTCTGTCTGAAAGCCCATCTTGGATCCTGATAGACGAGCTTCTCTCTCCAACACGTCAATTCTCATATAGCTCACAGGCTGCCATCTGAATCTGTTGAAACTCACCCTAGAGCAATACAGGCCTTTAATGCTTTGCTCTGACGGAGCCCACAGAGGGATAGTAATACTAGAGCTCCAGATGCGTCTAAAGGATCCCTTCTCTTTAGAAAGCGCCGAAATGACTAAGCGGGCTAACAAACCCAGGAAACCTCGAGATGAGGA]




>consensus_1095#0
TCTACTGACTTACTAGGTGTGAATAAAGGGGAAAAAAAACCTTTAGGCTGCTAATGCATT
CTGTCTGAAAGCCCATCTTGGATCCTGATAGACGAGCTTCTCTCTCCAACACGTCAATTC
TCATATAGCTCACAGGCTGCCATCTGAATCTGTTGAAACTCACCCTAGAGCAATACAGGC
CTTTAATGCTTTGCTCTGACGGAGCCCACAGAGGGATAGTAATACTAGAGCTCCAGATGC
GTCTAAAGGATCCCTTCTCTTTAGAAAGCGCCGAAATGACTAAGCGGGCTAACAAACCCA
GGAAACCTCGAGATGAGGA

consensusID : consensus_1095#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GATCCCTTTAGCGAGACGAAAGAGTAAGGGATCGTTGTGTTTCTGTCCGGATTCGAATTCGTTTCAGAATGCCGTAACATCTCCAGACGCTGTTGCGTGAAACACAATTGTAAATTCACAATTTGGTCTTACAAGCTAATGTAGCTAGCCTGTTTAAGAGTGCAATTTCACCTTTGGCTTCAGTGTGAGCAACATTGTTTAGTATTGGAGCTAATCTAAAGGGAGCTCCAGATGCGTCTAAAGGATCCCTTCTCTTTAAAAGTCGCCGAAATGACTAAGCGGACTAACANACCCAGGAAACCTCGAGATGAN]

[+] EMBL FR0058113            [GATCCCTTTAGCGAGACGAAAGAGTAAGGGATCGTTGTGTTTCTGTCCGGATTCGAATTCGTTTCAGAATGCCGTAACATCTCCAGACGCTGTTGCGTGAAACACAATTGTAAATTCACAATTTGGTCTTACAAGCTAATGTAGCTAGCCTGTTTAAGAGTGCAATTTCACCTTTGGCTTCAGTGTGAGCAACATTGTTTAGTATTGGAGCTAATCTAAAGGGAGCTCCAGATGCGTCTAAAGGATCCCTTCTCTTTAAAAGTCGCCGAAATGACTAAGCGGACTAACANACCCAGGAAACCTCGAGATGAN]




>consensus_1095#1
GATCCCTTTAGCGAGACGAAAGAGTAAGGGATCGTTGTGTTTCTGTCCGGATTCGAATTC
GTTTCAGAATGCCGTAACATCTCCAGACGCTGTTGCGTGAAACACAATTGTAAATTCACA
ATTTGGTCTTACAAGCTAATGTAGCTAGCCTGTTTAAGAGTGCAATTTCACCTTTGGCTT
CAGTGTGAGCAACATTGTTTAGTATTGGAGCTAATCTAAAGGGAGCTCCAGATGCGTCTA
AAGGATCCCTTCTCTTTAAAAGTCGCCGAAATGACTAAGCGGACTAACANACCCAGGAAA
CCTCGAGATGAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1095#0      TCTACTGACTTACTAGGTGTGAATAAAGGGGAAAAAAAACCTTTAGGCTGCTAATGCATT 60
consensus_1095#1      ------GATCCCTTTAGCGAGACGAAAGAGTAAGGGA--TCGTTGTGTTTCTG------T 46
                            **     *  * * **  **** * **   *   * **  * * **       *

consensus_1095#0      CTGTCTGAAAGCCCATCTTGGATCCTGATAGACGAGCTTCTCTCTCCAACACGTCAATTC 120
consensus_1095#1      CCGGATTCGAATTCGTTTCAGA--ATGCCGTAACATCTCCAGACGCTGTTGCGTGAAACA 104
                      * *  *   *   * * *  **   **    *  * ** *   * *     *** **   

consensus_1095#0      TCATAT--AGCTCACAGGCTGCCATCTGAATCTGTTGAAACTCACCC-TAGAGCAATACA 177
consensus_1095#1      CAATTGTAAATTCACAATTTGGTCTTACAAGCTAATGTAGCTAGCCTGTTTAAGAGTGCA 164
                        **    *  *****   **   *   ** **  ** * **  **  *  *  * * **

consensus_1095#0      G----GCCTTTAATGCTTTGCTCTGACGGAGCCCACAGAGGGATAGTAATACT------A 227
consensus_1095#1      ATTTCACCTTTG--GCTTCAGTGTGAGCAACATTGTTTAGTATTGGAGCTAATCTAAAGG 222
                            *****   ****   * ***   *        **   * *   ** *       

consensus_1095#0      GAGCTCCAGATGCGTCTAAAGGATCCCTTCTCTTTAGAAAGCGCCGAAATGACTAAGCGG 287
consensus_1095#1      GAGCTCCAGATGCGTCTAAAGGATCCCTTCTCTTTAAAAGTCGCCGAAATGACTAAGCGG 282
                      ************************************ **  *******************

consensus_1095#0      GCTAACAAACCCAGGAAACCTCGAGATGAGGA 319
consensus_1095#1      ACTAACANACCCAGGAAACCTCGAGATGAN-- 312
                       ****** *********************

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)