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Takifugu rubripes
cluster # 110 cluster # 110       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_110#0 length = 608 sequences # 1  
 consensus_110#1 length = 444 sequences # 1  
consensusID : consensus_110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence 
                              [ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGGNNAACATCTACCCATATATGTGGACGGCGGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCGATAGAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAAGAGGAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAGAGAGGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAGAGGAAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGGAGAAGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGACAGAACAAGGAA]

[+] EMBL CA329316             [ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGGNNAACATCTACCCATATATGTGGACGGCGGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCGATAGAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAAGAGGAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAGAGAGGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAGAGGAAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGGAGAAGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGACAGAACAAGGAA]




>consensus_110#0
ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAA
AAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAG
CACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGGNNAACATCTACCCATATATGTGGACGGC
GGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCGATA
GAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAAGAG
GAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAGAGA
GGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAGAGG
AAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGGAGA
AGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGACAGA
ACAAGGAA

consensusID : consensus_110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence 
                              [CGGGAAAACGATTTTTTTTTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGACATCTTCACATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACGGCCGTGTCAGCAGCTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCTGCCACGTGGAGTTGGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGCCGTTGCAGGAGTCCTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGAGAGGTACGCCAGGGCAGGCAGGATGTAGTTCTGATGGAGGAGCAGCAG]

[+] EMBL CA329426             [CGGGAAAACGATTTTTTTTTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGACATCTTCACATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACGGCCGTGTCAGCAGCTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCTGCCACGTGGAGTTGGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGCCGTTGCAGGAGTCCTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGAGAGGTACGCCAGGGCAGGCAGGATGTAGTTCTGATGGAGGAGCAGCAG]




>consensus_110#1
CGGGAAAACGATTTTTTTTTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAAGTCT
ATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAA
AGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGACATCTTCA
CATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACGGCCGTGTCAGCAG
CTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCTGCCACGTGGAGTT
GGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGCCGTTGCAGGAGTC
CTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGAGAGGTACGCCAGGGCAGGCAGGAT
GTAGTTCTGATGGAGGAGCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_110#0      ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAA 60
consensus_110#1      ------CGGGAAAACGATTTTTTTT--TAATTGATTTTCCGAAATAGGAGATTAAAAAAA 52
                           *******************  *********************************

consensus_110#0      AAA-GTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGA 119
consensus_110#1      AAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGA 112
                     *** ********************************************************

consensus_110#0      GCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 179
consensus_110#1      GCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGA 172
                     ****************************************************** * *  

consensus_110#0      TGTGTGTGTGTGTGTGTG-TGTGTGTGTGTGNGGNN-AACATCTACCCATATATGTGGAC 237
consensus_110#1      CATCTTCACATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACG----- 227
                       * *     * * * **   ** *** * *  *   * **** **      * *     

consensus_110#0      GGCGGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCG 297
consensus_110#1      GCCGTGTCAGCAGCTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCT 287
                     * ** *   *  ** *  * *       ** ** * ** *            ***   * 

consensus_110#0      ATAGAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAA 357
consensus_110#1      GCCACGTGGAGTTGGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGC 347
                          * ****      *   * ** *           *      * *  **        

consensus_110#0      GAGGAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAG 417
consensus_110#1      CGTTGCAGGAGTCCTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGA-GAGGTACGCC 406
                           *****      * **      * *       ** * *** * * ***  **   

consensus_110#0      AGAGGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAG 477
consensus_110#1      AGGGCAGGCAGGATGTAGTTCTGATGGAGGAGCAGCAG---------------------- 444
                     ** * **  **   * *     *   **  **  * *                       

consensus_110#0      AGGAAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGG 537
consensus_110#1      ------------------------------------------------------------
                                                                                 

consensus_110#0      AGAAGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGAC 597
consensus_110#1      ------------------------------------------------------------
                                                                                 

consensus_110#0      AGAACAAGGAA 608
consensus_110#1      -----------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)