|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[GTAGCCACCAGCGACTACATCTGCGAAAAACCTTCTGAAAACTCCGATTTGATTTCACTTATCATACATAAGGGATATCGGATATTTCCTTTGGACCGTCTCAAACTGCCGATACGTGATATTTTAAGTCCCAACGCCGCGGTAGCGACTTTTTTTTTTTTTTTTTTTACTGGAGACTAATGTACTAAACCAAACGGAAGTAACTTGCCAGTTGCCTGGCTAAGCTTGTGGTGTCTGAATGCCAACTCTGTGGGTGATGGAGTTGAGCAGGCAACTCTGTGGAAAGATGAGGAAGTCAGGTAGAAGGGCTCATCTTTCCTCTCCTCCATCCATCACCTTTGGGCTGGAGATCCACTTTTACACGCCGATTGTGCACCAGCTTGAGTTCCTGAGCGGCTGCTACACTGCAGAGGAGCTCTGCGTGAAAGCTGCCAAGAAATGCTCTATCTCTCCTTTGTGCCATAACCTGTTTGGGTTGTATGATGAGAAAGCAGGCATGTGGTACCCACCCAGCTACGAGTTCACAGTCACGGACGAAATAAGTCTGAAGCTGCATTATCGCATGAGATTTTATCTCAGAAATTGGCATGGCAAC]
[+] EMBL BU805712 [GTAGCCACCAGCGACTACATCTGCGAAAAACCTTCTGAAAACTCCGATTTGATTTCACTTATCATACATAAGGGATATCGGATATTTCCTTTGGACCGTCTCAAACTGCCGATACGTGATATTTTAAGTCCCAACGCCGCGGTAGCGACTTTTTTTTTTTTTTTTTTTACTGGAGACTAATGTACTAAACCAAACGGAAGTAACTTGCCAGTTGCCTGGCTAAGCTTGTGGTGTCTGAATGCCAACTCTGTGGGTGATGGAGTTGAGCAGGCAACTCTGTGGAAAGATGAGGAAGTCAGGTAGAAGGGCTCATCTTTCCTCTCCTCCATCCATCACCTTTGGGCTGGAGATCCACTTTTACACGCCGATTGTGCACCAGCTTGAGTTCCTGAGCGGCTGCTACACTGCAGAGGAGCTCTGCGTGAAAGCTGCCAAGAAATGCTCTATCTCTCCTTTGTGCCATAACCTGTTTGGGTTGTATGATGAGAAAGCAGGCATGTGGTACCCACCCAGCTACGAGTTCACAGTCACGGACGAAATAAGTCTGAAGCTGCATTATCGCATGAGATTTTATCTCAGAAATTGGCATGGCAAC]
consensusID : consensus_1132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[TGCGGTCGGGAGGAACGGGCTGAGGACTTGTTGCGAACCGTACGGCGGCGGCTGCGTCCCGGGAGCTGTCAAATATTGCGCAGAGGCTTCAGTCTCCAGACAGTGGACTAACCTGTCTAATCCATCAGACAAACAACTCCGAAGATTAACCTCTCTTAGCCTTGCGAAACCAGTTCTCAGTCTCAGTCACCGGAAGGTTCGTTTTAAAATGATTGCGAATTTGTCACATGGCTTTGGAGAATTCAATAACAACAAAAAATGGCGACAATCACGTTGCATCGTGTGGTCTTGCTGCGTCATTAAAAATATTCACGTAAACAGGGGAGAATAAACGAGGGATTTTCAGTGTCTGAATGCCAACTCTGTGGGTGATGGAGTTGAGCAGGCAACTCTGTGGAAAGATGAGGAAGTCAGGTAGAAGGGCTCATCTTTCCTCTCCTCCATCCATCACCTTTGGG]
[+] EMBL BU805325 [TGCGGTCGGGAGGAACGGGCTGAGGACTTGTTGCGAACCGTACGGCGGCGGCTGCGTCCCGGGAGCTGTCAAATATTGCGCAGAGGCTTCAGTCTCCAGACAGTGGACTAACCTGTCTAATCCATCAGACAAACAACTCCGAAGATTAACCTCTCTTAGCCTTGCGAAACCAGTTCTCAGTCTCAGTCACCGGAAGGTTCGTTTTAAAATGATTGCGAATTTGTCACATGGCTTTGGAGAATTCAATAACAACAAAAAATGGCGACAATCACGTTGCATCGTGTGGTCTTGCTGCGTCATTAAAAATATTCACGTAAACAGGGGAGAATAAACGAGGGATTTTCAGTGTCTGAATGCCAACTCTGTGGGTGATGGAGTTGAGCAGGCAACTCTGTGGAAAGATGAGGAAGTCAGGTAGAAGGGCTCATCTTTCCTCTCCTCCATCCATCACCTTTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1132#0 GTAGCCACCAGCGACTACATCTGCGAAAAACCTTCTGAAAACTCCGATTTGATTTCACTT 60
consensus_1132#1 ---------------TGCGGTCGGGAGGAACGGGCTGAGGACT---------TGTTGCGA 36
* * * ** *** **** *** * * *
consensus_1132#0 ATCATACATAAGGGATATCGGATATTTCCTTTGGACCGTCTCAAACTGCCGATACGTGAT 120
consensus_1132#1 ACCGTAC------GGCGGCGGCTGCGTCCCGGGAGCTGTCAAATATTGCGCAGAGGC--- 87
* * *** * *** * *** * * *** * * *** * * *
consensus_1132#0 ATTTTAAGTCCCAACGCCGCGGTAGCGACTTTTTTTTTTTTTTTTTTTA------CTGGA 174
consensus_1132#1 ---TTCAGTCTCCAGACAGTGG-ACTAACCTGTCTAATCCATCAGACAAACAACTCCGAA 143
** **** * * * * ** * ** * * * * * * * * *
consensus_1132#0 GACTAATGTA-CTAAACCAAACGGAAGTAACTTGC-----CAGTTGCCTGGCTAAGCTTG 228
consensus_1132#1 GATTAACCTCTCTTAGCCTTGCGAAACCAGTTCTCAGTCTCAGTCACCGGA--AGGTTCG 201
** *** * ** * ** ** ** * * * **** ** * * * * *
consensus_1132#0 TGGTGTCTGAATGCCAACTCTGTGGGTGATGGAGTTG-AGCAGGCAACTCTGTGGAAAGA 287
consensus_1132#1 TTTTAAAATGATTGCGAATTTGTCAC--ATGGCTTTGGAGAATTCAATAACAACAAAAAA 259
* * ** * * * *** **** *** ** * *** *** *
consensus_1132#0 TGAGGA-AGTCAGGTAGAAGGGCTCATCTTTCCTCTCCTCCATCCATCACCTTTGGGCTG 346
consensus_1132#1 TGGCGACAATCACGTTGCATCG--TGTGGTCTTGCTGCGTCATTAAAAATATTCACG-TA 316
** ** * *** ** * * * * * ** * *** * * ** * *
consensus_1132#0 GAGATCCACTTTTACACGCCGATTGTGCACCAGCTTGAGTTC--CTGAGCGGCTGCTACA 404
consensus_1132#1 AACAGGGGAGAATAAACGAGGGATTTTCAGTGTCTGAATGCCAACTCTGTGGGTGATGGA 376
* * ** *** * * * ** ** * * ** * ** ** * *
consensus_1132#0 CTGCAGAGG--AGCTCTGCGTGAAAGCTGCCAAG-------AAATGCTCTATCTCTCCTT 455
consensus_1132#1 GTTGAGCAGGCAACTCTGTGGAAAGATGAGGAAGTCAGGTAGAAGGGCTCATCTTTCCTC 436
* ** * * ***** * ** *** ** * **** ****
consensus_1132#0 TGTGCCAT--AACCTGTTTGGGTTGTATGATGAGAAAGCAGGCATGTGGTACCCACCCAG 513
consensus_1132#1 TCCTCCATCCATCACCTTTGGG-------------------------------------- 458
* **** * * ******
consensus_1132#0 CTACGAGTTCACAGTCACGGACGAAATAAGTCTGAAGCTGCATTATCGCATGAGATTTTA 573
consensus_1132#1 ------------------------------------------------------------
consensus_1132#0 TCTCAGAAATTGGCATGGCAAC 595
consensus_1132#1 ----------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |