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Takifugu rubripes
cluster # 1151 cluster # 1151       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1151#0 length = 435 sequences # 1  
 consensus_1151#1 length = 314 sequences # 1  
consensusID : consensus_1151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence 
                              [ACACCAGTTTTATTAGCTGCTATGGGTAGAATTAGGCTAGCTAAGGTGAAACATCATGTGTTTACGTAGGACACCGTCCATAGGCTTGATTATATATGTGATACATGCATATATATACATATGTAGCTTAATATGCGTCACAACGAAATGGACTCCATCAAATACAGCTGACACAGTGATCGTGATATGCGATGTTATCCATCTTATCACAAAGAAAAGCAGCTCTGGGAATTCTGGACATTAAACCTAAACATGAAATGATAAAATCTGGGGTAAGATTGAGTCATCTGTGCAGATAAGGCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGATCCACTCTGCAAATCTGTGATCTAATTCGTCAAGGAGATGCTCAGTGAGTAATTCAGTCGTCTTTAGTCTAATTCTCTTGGCATGTGAACCACAATATTG]

[+] EMBL FR0058338            [ACACCAGTTTTATTAGCTGCTATGGGTAGAATTAGGCTAGCTAAGGTGAAACATCATGTGTTTACGTAGGACACCGTCCATAGGCTTGATTATATATGTGATACATGCATATATATACATATGTAGCTTAATATGCGTCACAACGAAATGGACTCCATCAAATACAGCTGACACAGTGATCGTGATATGCGATGTTATCCATCTTATCACAAAGAAAAGCAGCTCTGGGAATTCTGGACATTAAACCTAAACATGAAATGATAAAATCTGGGGTAAGATTGAGTCATCTGTGCAGATAAGGCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGATCCACTCTGCAAATCTGTGATCTAATTCGTCAAGGAGATGCTCAGTGAGTAATTCAGTCGTCTTTAGTCTAATTCTCTTGGCATGTGAACCACAATATTG]




>consensus_1151#0
ACACCAGTTTTATTAGCTGCTATGGGTAGAATTAGGCTAGCTAAGGTGAAACATCATGTG
TTTACGTAGGACACCGTCCATAGGCTTGATTATATATGTGATACATGCATATATATACAT
ATGTAGCTTAATATGCGTCACAACGAAATGGACTCCATCAAATACAGCTGACACAGTGAT
CGTGATATGCGATGTTATCCATCTTATCACAAAGAAAAGCAGCTCTGGGAATTCTGGACA
TTAAACCTAAACATGAAATGATAAAATCTGGGGTAAGATTGAGTCATCTGTGCAGATAAG
GCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGATCCACTCTGCAAATCTGTGATCTAA
TTCGTCAAGGAGATGCTCAGTGAGTAATTCAGTCGTCTTTAGTCTAATTCTCTTGGCATG
TGAACCACAATATTG

consensusID : consensus_1151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence 
                              [GCTACCAGGCTACCAGCAGCGGAAAATACCTCGATTCCTGACTACACGGGACTTGGGGACAGACACTCAAGGCTTTCTGTCCAACATGGGGAAAGGTGGCGGTACATTTGACCGGCTTCTCGATAAGGCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGAGTCCATTCTGCAAATCTGCGATCTAATTCGTCAAGGAGATGCTCAAGCCAAGTATGCGGTTGGGGCCATTAAGAAAAAGCTGAATGACAAAAATCCCCATGTTGCTCTATATGCACTTGAGGTGCTCGAGGCAGTGGTGAAAAACTGTGGCC]

[+] EMBL FR0063637            [GCTACCAGGCTACCAGCAGCGGAAAATACCTCGATTCCTGACTACACGGGACTTGGGGACAGACACTCAAGGCTTTCTGTCCAACATGGGGAAAGGTGGCGGTACATTTGACCGGCTTCTCGATAAGGCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGAGTCCATTCTGCAAATCTGCGATCTAATTCGTCAAGGAGATGCTCAAGCCAAGTATGCGGTTGGGGCCATTAAGAAAAAGCTGAATGACAAAAATCCCCATGTTGCTCTATATGCACTTGAGGTGCTCGAGGCAGTGGTGAAAAACTGTGGCC]




>consensus_1151#1
GCTACCAGGCTACCAGCAGCGGAAAATACCTCGATTCCTGACTACACGGGACTTGGGGAC
AGACACTCAAGGCTTTCTGTCCAACATGGGGAAAGGTGGCGGTACATTTGACCGGCTTCT
CGATAAGGCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGAGTCCATTCTGCAAATCTG
CGATCTAATTCGTCAAGGAGATGCTCAAGCCAAGTATGCGGTTGGGGCCATTAAGAAAAA
GCTGAATGACAAAAATCCCCATGTTGCTCTATATGCACTTGAGGTGCTCGAGGCAGTGGT
GAAAAACTGTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1151#0      ACACCAGTTTTATTAGCTGCTATGGGTAGAATTAGGCTAGCTAAGGTGAAACATCATGTG 60
consensus_1151#1      ------------------------------------------------------------
                                                                                  

consensus_1151#0      TTTACGTAGGACACCGTCCATAGGCTTGATTATATATGTGATACATGCATATATATACAT 120
consensus_1151#1      ------------------------------------------------------------
                                                                                  

consensus_1151#0      ATGTAGCTTAATATGCGTCACAACGAAATGGACTCCATCAAATACAGCTGACACAGTGAT 180
consensus_1151#1      ----------------------------------------------GCTACCAGGCTACC 14
                                                                    ***  **   *   

consensus_1151#0      CGTGATATGCGATGTTATCCATCTTATCACAAAGAAAAGCAGCTCTGGGAATTCTGGACA 240
consensus_1151#1      AGCAGCGGAAAATACCTCGATTCCTGACTACACGGGACTTGGGGACAGACACTCAAGGCT 74
                       *         **        ** *  *   * *  *    *     *  * **  * * 

consensus_1151#0      TTAAACCTAAACATGAAATGATAAAATCTGGGGTAAGATTGAGTCATCTGTGCAGATAAG 300
consensus_1151#1      TTCTGTCCAAC------ATGGGGAAAGGTGGCGGTACATTTGACCGGCT-TCTCGATAAG 127
                      **    * **       ***   ***  *** *  * ***    *  ** *   ******

consensus_1151#0      GCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGA-TCCACTCTGCAAATCTGTGATCTA 359
consensus_1151#1      GCCACCAGCCAGCTGCTGCTGGAAACCGACTGGGAGTCCATTCTGCAAATCTGCGATCTA 187
                      *********************************** **** ************ ******

consensus_1151#0      ATTCGTCAAGGAGATGCTCA-GTGAGTAATTCAGTCG---TCTTTAGTCTAATTCTCTTG 415
consensus_1151#1      ATTCGTCAAGGAGATGCTCAAGCCAAGTATGCGGTTGGGGCCATTAAGAAAAAGCTGAAT 247
                      ******************** *  *   ** * ** *    * ***    **  **    

consensus_1151#0      GCATGTGAACCACAATATTG---------------------------------------- 435
consensus_1151#1      G-ACAAAAATCCCCATGTTGCTCTATATGCACTTGAGGTGCTCGAGGCAGTGGTGAAAAA 306
                      * *    ** * * ** ***                                        

consensus_1151#0      --------
consensus_1151#1      CTGTGGCC 314


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)