These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCATGCACGTATGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCATCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGACACCGTCAACATGAAGACCGTCAAAGAGAAGCTGCGTTACCTGAAGAACACTGTGGAGTCCTGCAGGACCATCC] [+] EMBL BU805717 [CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCATGCACGTATGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCATCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGACACCGTCAACATGAAGACCGTCAAAGAGAAGCTGCGTTACCTGAAGAACACTGTGGAGTCCTGCAGGACCATCC] consensusID : consensus_1176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCGTGCACGTGTGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCGTCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGA] [+] EMBL BU806784 [CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCGTGCACGTGTGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCGTCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1176#0 CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCT 60 consensus_1176#1 CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCT 60 ************************************************************ consensus_1176#0 GC------------------------------TGCTGCTGCTGCTGCTGCTGCCACCAAG 90 consensus_1176#1 GCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAG 120 ** **************************** consensus_1176#0 TGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCATGCACGTATGTGGT 150 consensus_1176#1 TGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCGTGCACGTGTGTGGT 180 ********************************************* ******* ****** consensus_1176#0 GAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGA 210 consensus_1176#1 GAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGA 240 ************************************************************ consensus_1176#0 GACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCAT 270 consensus_1176#1 GACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCGT 300 ********************************************************** * consensus_1176#0 CCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCT 330 consensus_1176#1 CCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCT 360 ************************************************************ consensus_1176#0 TCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCA 390 consensus_1176#1 TCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCA 420 ************************************************************ consensus_1176#0 GTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAAT 450 consensus_1176#1 GTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAAT 480 ************************************************************ consensus_1176#0 TTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGACACCGT 510 consensus_1176#1 TTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGA------ 534 ****************************************************** consensus_1176#0 CAACATGAAGACCGTCAAAGAGAAGCTGCGTTACCTGAAGAACACTGTGGAGTCCTGCAG 570 consensus_1176#1 ------------------------------------------------------------ consensus_1176#0 GACCATCC 578 consensus_1176#1 -------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |