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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[AACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGCATGTCTGCAACGTAAACACGTTTCCTACGTAGATGAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGGCGCCCTCTTCAGGGAGGGGGACTGTTGGATTTGCATGGAACTTATGTCTACCTCATTAGACAAATTCTACAAATATGTA]
[+] EMBL BU807672 [AACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGCATGTCTGCAACGTAAACACGTTTCCTACGTAGATGAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGGCGCCCTCTTCAGGGAGGGGGACTGTTGGATTTGCATGGAACTTATGTCTACCTCATTAGACAAATTCTACAAATATGTA]
consensusID : consensus_1179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[CGACTCCCAGTCCCGATAGTAACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGCGGCC]
[+] EMBL BU805720 [CGACTCCCAGTCCCGATAGTAACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGCGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1179#0 --------------------AACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTA 40
consensus_1179#1 CGACTCCCAGTCCCGATAGTAACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTA 60
****************************************
consensus_1179#0 CTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGCATGTCTGCAACGTA 100
consensus_1179#1 CTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAG--------------- 105
*********************************************
consensus_1179#0 AACACGTTTCCTACGTAGATGAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGG 160
consensus_1179#1 -----------------------AAACCAAAACCTACTGGAGATGTCAAAATGAAACAGG 142
*************************************
consensus_1179#0 TAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCT 220
consensus_1179#1 TAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCT 202
************************************************************
consensus_1179#0 GCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACA 280
consensus_1179#1 GCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACA 262
************************************************************
consensus_1179#0 CAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGC 340
consensus_1179#1 CAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGC 322
************************************************************
consensus_1179#0 AGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGAT 400
consensus_1179#1 AGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGAT 382
************************************************************
consensus_1179#0 GGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGA 460
consensus_1179#1 GGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGA 442
************************************************************
consensus_1179#0 GAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCC 520
consensus_1179#1 GAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCC 502
************************************************************
consensus_1179#0 CTACATCGTCCAGTTCTACGGCGCCCTCTTCAGGGAGGGGGACTGTTGGATTTGCATGGA 580
consensus_1179#1 CTACATCGTCCAGTTCTACGCGGCC----------------------------------- 527
******************** ***
consensus_1179#0 ACTTATGTCTACCTCATTAGACAAATTCTACAAATATGTA 620
consensus_1179#1 ----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |