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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1182 cluster # 1182       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1182#0 length = 365 sequences # 1  
 consensus_1182#1 length = 343 sequences # 1  
consensusID : consensus_1182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence 
                              [TAGGCTGAAGCGGCAGGCAAATAAGACTGAAAGTATGGAAACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGATGGAACAAGTTGTGAAGTTAAATGGACTGAGGAAGAGGATGAAAACCTTAAAATCCTTACTAACAACTTTGGGAAATCTGATTGGAAAACCATTGCCAGTCTTTTACCTGGGCGGACGGAAGTGCAGTGTATGCAACGATGGAATATGCACCTGGATCCCACTGCTTCGAAATCCTACTGGGCCAAAGACGAAGATGAAAAGATAGCAGAGCTGGTAACCAAATATGGCACAATAAACTGGCCTCTGATTTCCAAGCCCATGATCT]

[+] EMBL FR0060983            [TAGGCTGAAGCGGCAGGCAAATAAGACTGAAAGTATGGAAACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGATGGAACAAGTTGTGAAGTTAAATGGACTGAGGAAGAGGATGAAAACCTTAAAATCCTTACTAACAACTTTGGGAAATCTGATTGGAAAACCATTGCCAGTCTTTTACCTGGGCGGACGGAAGTGCAGTGTATGCAACGATGGAATATGCACCTGGATCCCACTGCTTCGAAATCCTACTGGGCCAAAGACGAAGATGAAAAGATAGCAGAGCTGGTAACCAAATATGGCACAATAAACTGGCCTCTGATTTCCAAGCCCATGATCT]




>consensus_1182#0
TAGGCTGAAGCGGCAGGCAAATAAGACTGAAAGTATGGAAACAGAGAAAGATAGTATTAT
TGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGATGGAACAAGTTGTGAAGTTAA
ATGGACTGAGGAAGAGGATGAAAACCTTAAAATCCTTACTAACAACTTTGGGAAATCTGA
TTGGAAAACCATTGCCAGTCTTTTACCTGGGCGGACGGAAGTGCAGTGTATGCAACGATG
GAATATGCACCTGGATCCCACTGCTTCGAAATCCTACTGGGCCAAAGACGAAGATGAAAA
GATAGCAGAGCTGGTAACCAAATATGGCACAATAAACTGGCCTCTGATTTCCAAGCCCAT
GATCT

consensusID : consensus_1182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence 
                              [TCTTCTAGCATCTCAGCGAGGGGGCTAACCATCTGAAAGATGATTCCTCGCGCGTTTACGGAGCTATTTCATCTCCCTATAAAATAGTCACTCTTAGCTTACAATTAGCCACTTGAGATAGCAGCAGCGGCTAGCCCACCGTTCTGCGCACCACAGAAGAAGAAAGTCGCGCGGTATGGAAACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGATGGAACAAGGTGTGAAGTTAAATGCGCTGAGGAAGAGGATGAAAACCTTAAAATCCTTACTAACAACTTTGGGAAATCTGATTGGAAAACCATTGGCAGGCTT]

[+] EMBL FR0058406            [TCTTCTAGCATCTCAGCGAGGGGGCTAACCATCTGAAAGATGATTCCTCGCGCGTTTACGGAGCTATTTCATCTCCCTATAAAATAGTCACTCTTAGCTTACAATTAGCCACTTGAGATAGCAGCAGCGGCTAGCCCACCGTTCTGCGCACCACAGAAGAAGAAAGTCGCGCGGTATGGAAACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGATGGAACAAGGTGTGAAGTTAAATGCGCTGAGGAAGAGGATGAAAACCTTAAAATCCTTACTAACAACTTTGGGAAATCTGATTGGAAAACCATTGGCAGGCTT]




>consensus_1182#1
TCTTCTAGCATCTCAGCGAGGGGGCTAACCATCTGAAAGATGATTCCTCGCGCGTTTACG
GAGCTATTTCATCTCCCTATAAAATAGTCACTCTTAGCTTACAATTAGCCACTTGAGATA
GCAGCAGCGGCTAGCCCACCGTTCTGCGCACCACAGAAGAAGAAAGTCGCGCGGTATGGA
AACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGA
TGGAACAAGGTGTGAAGTTAAATGCGCTGAGGAAGAGGATGAAAACCTTAAAATCCTTAC
TAACAACTTTGGGAAATCTGATTGGAAAACCATTGGCAGGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1182#0      ------------------------------------------------------------
consensus_1182#1      TCTTCTAGCATCTCAGCGAGGGGGCTAACCATCTGAAAGATGATTCCTCGCGCGTTTACG 60
                                                                                  

consensus_1182#0      ------------------------------------------------------------
consensus_1182#1      GAGCTATTTCATCTCCCTATAAAATAGTCACTCTTAGCTTACAATTAGCCACTTGAGATA 120
                                                                                  

consensus_1182#0      -------------------TAGGCTGAA-GCGGCAGGCAAATAAGACTGAA-AGTATGGA 39
consensus_1182#1      GCAGCAGCGGCTAGCCCACCGTTCTGCGCACCACAGAAGAAGAAAGTCGCGCGGTATGGA 180
                                             ***    *  ***   ** **    *    *******

consensus_1182#0      AACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGA 99
consensus_1182#1      AACAGAGAAAGATAGTATTATTGGCACTGAGTCTGACTCAGATACAATACAGAAGAAAGA 240
                      ************************************************************

consensus_1182#0      TGGAACAAGTTGTGAAGTTAAATGGACTGAGGAAGAGGATGAAAACCTTAAAATCCTTAC 159
consensus_1182#1      TGGAACAAGGTGTGAAGTTAAATGCGCTGAGGAAGAGGATGAAAACCTTAAAATCCTTAC 300
                      ********* **************  **********************************

consensus_1182#0      TAACAACTTTGGGAAATCTGATTGGAAAACCATTGCCAGTCTTTTACCTGGGCGGACGGA 219
consensus_1182#1      TAACAACTTTGGGAAATCTGATTGGAAAACCATTGGCAGGCTT----------------- 343
                      *********************************** *** ***                 

consensus_1182#0      AGTGCAGTGTATGCAACGATGGAATATGCACCTGGATCCCACTGCTTCGAAATCCTACTG 279
consensus_1182#1      ------------------------------------------------------------
                                                                                  

consensus_1182#0      GGCCAAAGACGAAGATGAAAAGATAGCAGAGCTGGTAACCAAATATGGCACAATAAACTG 339
consensus_1182#1      ------------------------------------------------------------
                                                                                  

consensus_1182#0      GCCTCTGATTTCCAAGCCCATGATCT 365
consensus_1182#1      --------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)