These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CGGTTCCGGGTATTTTCATACTCCACTCGGCGGCGTTTATCCCTCCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGGTCCAAGATGGGCTTCCTGGAATCTGGGAGTGTTTATCTGCATAAGATGCGCGGGCATCCACAGGAACCTGGGAGTACATATATCCAGAGTAAAGTCAGTCAACCTGGACCAGTGGACCTCAGAACAAATCCAGAGTATACAAGATATGGGAAACACCAAGGCCAGAAAGCTCTATGAGGCCAACCTTCCAGAAACCTTCAGAAGACCTCAAACAGACCAAGCTGTGGAATTCTTCATCAGGGATAAATATGAGAAGAAGAAATACTACAGCGAGAAAGTGACCAACGGGAGCAGTCCAAAGGATGCTAAGAAG] [+] EMBL CA330353 [CGGTTCCGGGTATTTTCATACTCCACTCGGCGGCGTTTATCCCTCCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGGTCCAAGATGGGCTTCCTGGAATCTGGGAGTGTTTATCTGCATAAGATGCGCGGGCATCCACAGGAACCTGGGAGTACATATATCCAGAGTAAAGTCAGTCAACCTGGACCAGTGGACCTCAGAACAAATCCAGAGTATACAAGATATGGGAAACACCAAGGCCAGAAAGCTCTATGAGGCCAACCTTCCAGAAACCTTCAGAAGACCTCAAACAGACCAAGCTGTGGAATTCTTCATCAGGGATAAATATGAGAAGAAGAAATACTACAGCGAGAAAGTGACCAACGGGAGCAGTCCAAAGGATGCTAAGAAG] consensusID : consensus_1184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [CCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGTCCAAGATGGGCTTTCTGGAATCTGGGAGTGTTATCTGCATAAGATGCGCGGGCATCCACGGGACCCTGGAGGACCTATATCCCGAGTAAAAGCAGTCAACTGGACCCGGGGACCTCAAAACAATCCCAAGTATACAAATTTTGGAAACCCACGGGCCAAAAACTTTTAGGGGCCCCCTCTCAAAAATCTTGAAAAACCTCAAAAGACCACGGGGGGGATTTTTTCCTGGGGGGATTTTGGAGAAAAAAAATTCTCCCCGGAAGAGCCCCCCGGG] [+] EMBL BU805749 [CCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGTCCAAGATGGGCTTTCTGGAATCTGGGAGTGTTATCTGCATAAGATGCGCGGGCATCCACGGGACCCTGGAGGACCTATATCCCGAGTAAAAGCAGTCAACTGGACCCGGGGACCTCAAAACAATCCCAAGTATACAAATTTTGGAAACCCACGGGCCAAAAACTTTTAGGGGCCCCCTCTCAAAAATCTTGAAAAACCTCAAAAGACCACGGGGGGGATTTTTTCCTGGGGGGATTTTGGAGAAAAAAAATTCTCCCCGGAAGAGCCCCCCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1184#0 CGGTTCCGGGTATTTTCATACTCCACTCGGCGGCGTTTATCCCTCCGATTATGGTCTTTT 60 consensus_1184#1 --------------------------------------------CCGATTATGGTCTTTT 16 **************** consensus_1184#0 ATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAG 120 consensus_1184#1 ATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAG 76 ************************************************************ consensus_1184#0 TCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAA 180 consensus_1184#1 TCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAA 136 ************************************************************ consensus_1184#0 CGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGC 240 consensus_1184#1 CGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGC 196 ************************************************************ consensus_1184#0 CGACTGCGAGGCGAAAGGTCCAAGATGGGCTTCCTGGAATCTGGGAGTGTTTATCTGCAT 300 consensus_1184#1 CGACTGCGAGGCGAAAG-TCCAAGATGGGCTTTCTGGAATCTGGGAGTGTT-ATCTGCAT 254 ***************** ************** ****************** ******** consensus_1184#0 AAGATGCGCGGGCATCCACAGGAACCTGGGAGTACATATATCCAGAGTAAAGTCAGTCAA 360 consensus_1184#1 AAGATGCGCGGGCATCCACGGGACCCTGG-AGGACCTATATCCCGAGTAAAAGCAGTCAA 313 ******************* *** ***** ** ** ******* ******* ******* consensus_1184#0 CCTGGACCAGTGGACCTCAGAACAAATCCAGAGTATACAAGATATGGGAAACACCAAGGC 420 consensus_1184#1 C-TGGACCCGGGGACCTCAAAACAA-TCCCAAGTATACAA-ATTTTGGAAACCCACGGGC 370 * ****** * ******** ***** *** ********* ** * ****** * *** consensus_1184#0 CAGAAAGCTCTATGAGGCCAACCTTCCAGAAACCTTCAGAAGACCTCAAACAGACCAAGC 480 consensus_1184#1 CAAAAACTTTTAGGGGCCC--CCTCTCAAAAATCTTGA-AAAACCTCAAA-AGACCACGG 426 ** *** * ** * * ** *** ** *** *** * ** ******** ****** * consensus_1184#0 TGTGGAATTCTTCATCAGGGATAAATATGAGAAGAAGAAATACTACAGCGAGAAAGTGAC 540 consensus_1184#1 GGGGGATTTTTTCCT--GGGGGGATTTTGGAGAAAAAAAATTCTCCC---CGGAAGAGCC 481 * *** ** *** * *** * * ** * ** **** ** * * *** * * consensus_1184#0 CAACGGGAGCAGTCCAAAGGATGCTAAGAAG 571 consensus_1184#1 CCCCGGG------------------------ 488 * **** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |