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Takifugu rubripes
cluster # 1210 cluster # 1210       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1210#0 length = 492 sequences # 1  
 consensus_1210#1 length = 377 sequences # 1  
consensusID : consensus_1210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence 
                              [CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCAGGACTAAAGACGCTGGAGTCCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAAACTACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATCACCTGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAGATGTCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGGAGGTTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTCATGCAGTGTTTCCAA]

[+] EMBL BU805970             [CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCAGGACTAAAGACGCTGGAGTCCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAAACTACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATCACCTGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAGATGTCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGGAGGTTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTCATGCAGTGTTTCCAA]




>consensus_1210#0
CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCA
GGACTAAAGACGCTGGAGTCCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTA
ACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCT
GATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAAACT
ACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATCACC
TGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAGATG
TCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGGAGG
TTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTCATG
CAGTGTTTCCAA

consensusID : consensus_1210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence 
                              [CAATAGCTCCCGTNNCTCCCCCAGGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGCAAACCCCTGATGGATCTGTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCCAGCTACACCTTAGAACTGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCTTGATCGGGACGCTGGACGTGGAAAAGATCTTACTGAAACCCAAAGGGGAGGATAAAAATAAAAAGACAGGCCCCCAG]

[+] EMBL FR0059040            [CAATAGCTCCCGTNNCTCCCCCAGGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGCAAACCCCTGATGGATCTGTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCCAGCTACACCTTAGAACTGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCTTGATCGGGACGCTGGACGTGGAAAAGATCTTACTGAAACCCAAAGGGGAGGATAAAAATAAAAAGACAGGCCCCCAG]




>consensus_1210#1
CAATAGCTCCCGTNNCTCCCCCAGGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCC
AGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAG
ACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAA
GCAAACCCCTGATGGATCTGTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCCA
GCTACACCTTAGAACTGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCT
TGATCGGGACGCTGGACGTGGAAAAGATCTTACTGAAACCCAAAGGGGAGGATAAAAATA
AAAAGACAGGCCCCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1210#0      CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCA 60
consensus_1210#1      -----------------------------------CAATAGCT--CCCGTNNCTCCCCCA 23
                                                         *** ***    **    ********

consensus_1210#0      GGACTA-AAGACGC-TGGAGTC-CTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCAT 117
consensus_1210#1      GGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCAT 83
                      ****** ******* ******* *************************************

consensus_1210#0      CTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTG 177
consensus_1210#1      CTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTG 143
                      ************************************************************

consensus_1210#0      CCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAA 237
consensus_1210#1      CCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGCAAACCCCT--GATG--GATCT 199
                      **************************************  ****  *  ****  ***  

consensus_1210#0      ACTACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATC 297
consensus_1210#1      GTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCC--AGCTACACCTTA--GAAC 255
                        **     *      *   *  ***    *  ** * **   * * * ***    ** *

consensus_1210#0      ACCTGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAG 357
consensus_1210#1      TGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCTTGATCGGGACGCTGG 315
                         ** *  * * * *  ****     ** *  *     *   *    *   *  *   *

consensus_1210#0      ATGTCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGG 417
consensus_1210#1      ACGT---GGAAAAGATCTTACTGAAAC---CCAAAGGGGAGGATAA--AAATAAAAAGAC 367
                      * **   *  *  *  *   *** * *   **        * ** *  *   ** ***  

consensus_1210#0      AGGTTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTC 477
consensus_1210#1      AGGCCCCCAG-------------------------------------------------- 377
                      ***    *                                                    

consensus_1210#0      ATGCAGTGTTTCCAA 492
consensus_1210#1      ---------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)