These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCAGGACTAAAGACGCTGGAGTCCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAAACTACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATCACCTGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAGATGTCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGGAGGTTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTCATGCAGTGTTTCCAA] [+] EMBL BU805970 [CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCAGGACTAAAGACGCTGGAGTCCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAAACTACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATCACCTGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAGATGTCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGGAGGTTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTCATGCAGTGTTTCCAA] consensusID : consensus_1210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CAATAGCTCCCGTNNCTCCCCCAGGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGCAAACCCCTGATGGATCTGTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCCAGCTACACCTTAGAACTGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCTTGATCGGGACGCTGGACGTGGAAAAGATCTTACTGAAACCCAAAGGGGAGGATAAAAATAAAAAGACAGGCCCCCAG] [+] EMBL FR0059040 [CAATAGCTCCCGTNNCTCCCCCAGGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCATCTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTGCCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGCAAACCCCTGATGGATCTGTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCCAGCTACACCTTAGAACTGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCTTGATCGGGACGCTGGACGTGGAAAAGATCTTACTGAAACCCAAAGGGGAGGATAAAAATAAAAAGACAGGCCCCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1210#0 CAGTCAGGGGGCCTGCCAGGAATTAGGGTCTCCGCCAAAAGCAAAGCCCCGTCTCCCCCA 60 consensus_1210#1 -----------------------------------CAATAGCT--CCCGTNNCTCCCCCA 23 *** *** ** ******** consensus_1210#0 GGACTA-AAGACGC-TGGAGTC-CTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCAT 117 consensus_1210#1 GGACTAGAAGACGCGTGGAGTCTCTCCGACCTGTCCCAGTGGTATGCAGGAGGCCCCCAT 83 ****** ******* ******* ************************************* consensus_1210#0 CTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTG 177 consensus_1210#1 CTAACCATGGATGTGAAGGAAAACCCCATCGATCAAGACCTGTCACTGGCTGTGGTTCTG 143 ************************************************************ consensus_1210#0 CCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGGCAACCGTTCGGATGGTGATAA 237 consensus_1210#1 CCTGATGGAGAGGAGAGGATGACCACAGTCCACGGAAGCAAACCCCT--GATG--GATCT 199 ************************************** **** * **** *** consensus_1210#0 ACTACAAGAGGGCGCAGAAGACGATCCTTCGGGTCAGCCCTCGGGTCCCCCTGGCTGATC 297 consensus_1210#1 GTTAGTGACGCTTTGCGCCAAGTATCACCTGAATCCGTCC--AGCTACACCTTA--GAAC 255 ** * * * *** * ** * ** * * * *** ** * consensus_1210#0 ACCTGCCAGCCATCTGTGAGAAATGTGAATTTGATGTAGAGTCCACAGTTCTGTTGAGAG 357 consensus_1210#1 TGGTGACCACAAACAGCAAGAACACCAAACTCAAGCCCAATGTCTTGATCGGGACGCTGG 315 ** * * * * * **** ** * * * * * * * * consensus_1210#0 ATGTCCAGTCACTGTCCCCTCTGGACCTGTCCTGCTCTCTGAATGATTATGCAATAAGGG 417 consensus_1210#1 ACGT---GGAAAAGATCTTACTGAAAC---CCAAAGGGGAGGATAA--AAATAAAAAGAC 367 * ** * * * * *** * * ** * ** * * ** *** consensus_1210#0 AGGTTTACGCAAGAGACACCAAAAGACAGTCGGCCTCTCCTGCGTCTCCAGTCTCATGTC 477 consensus_1210#1 AGGCCCCCAG-------------------------------------------------- 377 *** * consensus_1210#0 ATGCAGTGTTTCCAA 492 consensus_1210#1 --------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |