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Takifugu rubripes
cluster # 1211 cluster # 1211       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1211#0 length = 593 sequences # 1  
consensus_1211#1 length = 330 sequences # 1  

consensusID : consensus_1211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence
                              [CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATGACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCACTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAGACCATAGATGATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACACAATGAGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTTGCACTAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTGTGCAAGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC]

[+] EMBL BU805979             [CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATGACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCACTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAGACCATAGATGATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACACAATGAGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTTGCACTAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTGTGCAAGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC]


>consensus_1211#0 CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATG ACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCACTGCCCCCAACTGTGTGTACGGCCCCG ATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGG ACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTG CCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGACA ACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAGA CCATAGATGATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACACAATG AGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTTGCAC TAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTGTGCA AGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC



consensusID : consensus_1211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGAACATTCACACTAGTGATTCCAGTGATGTATGTGAAGCGTCAC]

[+] EMBL FR0059529            [TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGAACATTCACACTAGTGATTCCAGTGATGTATGTGAAGCGTCAC]


>consensus_1211#1 TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCCGAT GGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGAC GGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCC TCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGACAAC GACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGAACATTCACACTA GTGATTCCAGTGATGTATGTGAAGCGTCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1211#0      CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATG 60
consensus_1211#1      ------------------------------------------------------------
                                                                                  

consensus_1211#0      ACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCAC-TGCCCCCAACTGTGTGTACGGCCCC 119
consensus_1211#1      ---TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCC 57
                         ******************************* *************************

consensus_1211#0      GATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAG 179
consensus_1211#1      GATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAG 117
                      ************************************************************

consensus_1211#0      GACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTT 239
consensus_1211#1      GACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTT 177
                      ************************************************************

consensus_1211#0      GCCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGAC 299
consensus_1211#1      GCCTCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGAC 237
                      ********* **************** *********************************

consensus_1211#0      AACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAG 359
consensus_1211#1      AACGACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGA-ACATTCAC 296
                      **************************** ****  *    *  *  * **  *  ** * 

consensus_1211#0      ACCATAGAT---GATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACAC 416
consensus_1211#1      ACTAGTGATTCCAGTGATGTATGTGAAGCGTCAC-------------------------- 330
                      ** *  ***     ** * *   ****  * **                           

consensus_1211#0      AATGAGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTT 476
consensus_1211#1      ------------------------------------------------------------
                                                                                  

consensus_1211#0      GCACTAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTG 536
consensus_1211#1      ------------------------------------------------------------
                                                                                  

consensus_1211#0      TGCAAGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC 593
consensus_1211#1      ---------------------------------------------------------
                                                                               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)