These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATGACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCACTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAGACCATAGATGATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACACAATGAGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTTGCACTAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTGTGCAAGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC] [+] EMBL BU805979 [CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATGACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCACTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAGACCATAGATGATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACACAATGAGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTTGCACTAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTGTGCAAGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC] consensusID : consensus_1211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGAACATTCACACTAGTGATTCCAGTGATGTATGTGAAGCGTCAC] [+] EMBL FR0059529 [TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCCGATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAGGACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTTGCCTCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGACAACGACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGAACATTCACACTAGTGATTCCAGTGATGTATGTGAAGCGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1211#0 CATCCAACATGGCGGCGCAGCGAAGGAACTTGATGCAGAGTCATCAGAGCTGGACAGATG 60 consensus_1211#1 ------------------------------------------------------------ consensus_1211#0 ACCTCCCGCTGTGCCAGATGTGTGGGGTTGGCAC-TGCCCCCAACTGTGTGTACGGCCCC 119 consensus_1211#1 ---TCCCGCTGTGCCAGATGTGTGGGGTTGGCACGTGCCCCCAACTGTGTGTACGGCCCC 57 ******************************* ************************* consensus_1211#0 GATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAG 179 consensus_1211#1 GATGGCAAAGGAACTCAGAGCCACACCAACGAGGACGGACACCTGAGGTTCAGAGGCGAG 117 ************************************************************ consensus_1211#0 GACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTT 239 consensus_1211#1 GACGGCTGTTTCCTCTATGGGGTTTTTAATGGTTATGATGGCAGCAGGGTGGCCAGTTTT 177 ************************************************************ consensus_1211#0 GCCTCCCAGTGTCTGACAGCTGAGCTCCTGCTTGGACAGATCAACTCCAGCCACACAGAC 299 consensus_1211#1 GCCTCCCAGGGTCTGACAGCTGAGCTTCTGCTTGGACAGATCAACTCCAGCCACACAGAC 237 ********* **************** ********************************* consensus_1211#0 AACGACATTCGCAGGATCCTCTCGCAGGCCTTTGATGTGGTGGAGAAGAGCTATTTTGAG 359 consensus_1211#1 AACGACATTCGCAGGATCCTCTCGCAGGTCTTTCCTAATTTAAATGACAGA-ACATTCAC 296 **************************** **** * * * * ** * ** * consensus_1211#0 ACCATAGAT---GATGCTTTGGCTGAAAAGGCAAACCTGTCCAGTTATCACCTGCAACAC 416 consensus_1211#1 ACTAGTGATTCCAGTGATGTATGTGAAGCGTCAC-------------------------- 330 ** * *** ** * * **** * ** consensus_1211#0 AATGAGGAGCGTCTGAAGGAGCTGGAGCAGGAGGTGTCCGGAGGAGCGACAGCCATCGTT 476 consensus_1211#1 ------------------------------------------------------------ consensus_1211#0 GCACTAATTATCAACAACAAGCTTTATATCGCCAACGTTGGTACCAACCGGGCTCTGCTG 536 consensus_1211#1 ------------------------------------------------------------ consensus_1211#0 TGCAAGTCCAGCAGCGATGGCCAGAACCAAGTTCTCCAGATCGGCCGGCCTCACAAC 593 consensus_1211#1 --------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |