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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGCTAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCAGGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTTACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAGATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTAGATGCATGTTGACCTTCTTAGGTCCCTT]
[+] EMBL BU805984 [CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGCTAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCAGGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTTACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAGATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTAGATGCATGTTGACCTTCTTAGGTCCCTT]
consensusID : consensus_1214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTGTGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAACAGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTTAAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC]
[+] EMBL CA331870 [AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTGTGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAACAGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTTAAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1214#0 CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGC 60
consensus_1214#1 -------------------------------------------------AATGGAAGTGC 11
** *** **
consensus_1214#0 TAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCA 120
consensus_1214#1 TGGGTGAGATGGATGCTGTCTCA----------CTGAGATGTGTGCCTGTGTGAGCCTGT 61
* * ** ** *** * * *** ** **
consensus_1214#0 GGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTT 180
consensus_1214#1 GGGTTCTAACGCGAACCGTGCCC-TAGCTTTTTA-----AAAATAAACTAGTTTCACTCT 115
*** * * * * *** **** * * * * ** * * ** *
consensus_1214#0 ACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAG 240
consensus_1214#1 --CTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAG 173
* * ** * ** * ** * ** * * * ***
consensus_1214#0 A--TCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTT 298
consensus_1214#1 AGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATC---------T 224
* ** * **** * ** * *** * * * * *** *
consensus_1214#0 CTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTG 358
consensus_1214#1 ATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCC----- 279
** * * * * * * * * * * ** * *** * **
consensus_1214#0 AAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGT 418
consensus_1214#1 ----AAACAAACACACACACAAAACAGAAATTAAC-----ACAGGATCCGATT-AGATAC 329
** * * ***** * * * * **** ****** * * ** *
consensus_1214#0 GGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAG 478
consensus_1214#1 AGAATG--GGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTG----CAA 383
* *** * * * ** ** * * * ** **** * * **
consensus_1214#0 CGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTT 538
consensus_1214#1 CACCCCACCCATTTCTCAAA-----ACAACTCTCCATTACTTAAGGGACCTAAGAAGGTC 438
* ** * * ** *** * * * ** ** * **** *
consensus_1214#0 TAGATGCATGTTGACCTTCTTAGGTCCCTT 568
consensus_1214#1 AACATGCATCTAAAACTTCCTTTTTCTTC- 467
* ****** * * **** * **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |