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Takifugu rubripes
cluster # 1214 cluster # 1214       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1214#0 length = 568 sequences # 1  
consensus_1214#1 length = 467 sequences # 1  

consensusID : consensus_1214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGCTAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCAGGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTTACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAGATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTAGATGCATGTTGACCTTCTTAGGTCCCTT]

[+] EMBL BU805984             [CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGCTAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCAGGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTTACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAGATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTAGATGCATGTTGACCTTCTTAGGTCCCTT]


>consensus_1214#0 CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGC TAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCA GGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTT ACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAG ATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCT CCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAA ATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGG TATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCG AGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTA GATGCATGTTGACCTTCTTAGGTCCCTT



consensusID : consensus_1214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence
                              [AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTGTGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAACAGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTTAAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC]

[+] EMBL CA331870             [AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTGTGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAACAGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTTAAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC]


>consensus_1214#1 AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTG TGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAA ATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAG ACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATAC AATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAAC AGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTT TCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTT AAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1214#0      CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGC 60
consensus_1214#1      -------------------------------------------------AATGGAAGTGC 11
                                                                         ** *** **

consensus_1214#0      TAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCA 120
consensus_1214#1      TGGGTGAGATGGATGCTGTCTCA----------CTGAGATGTGTGCCTGTGTGAGCCTGT 61
                      * *  **        ** *** *              *      ***  **  **     

consensus_1214#0      GGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTT 180
consensus_1214#1      GGGTTCTAACGCGAACCGTGCCC-TAGCTTTTTA-----AAAATAAACTAGTTTCACTCT 115
                      *** * *  *     *  ***   **** * *       *   *  ** * * **    *

consensus_1214#0      ACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAG 240
consensus_1214#1      --CTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAG 173
                        *   *        **   *      **     *  **  * ** * *   *    ***

consensus_1214#0      A--TCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTT 298
consensus_1214#1      AGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATC---------T 224
                      *  ** *  **** *   ** *  ***    *  *  *   *  ***            *

consensus_1214#0      CTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTG 358
consensus_1214#1      ATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCC----- 279
                       **  *  *  *   *  * * * *      *  *    ** * ***   *  **     

consensus_1214#0      AAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGT 418
consensus_1214#1      ----AAACAAACACACACACAAAACAGAAATTAAC-----ACAGGATCCGATT-AGATAC 329
                           ** * *   ***** * *  *   * ****     ******   * *  ** *  

consensus_1214#0      GGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAG 478
consensus_1214#1      AGAATG--GGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTG----CAA 383
                       * ***   *       * *  **  ** *   * *   ** **** * *       ** 

consensus_1214#0      CGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTT 538
consensus_1214#1      CACCCCACCCATTTCTCAAA-----ACAACTCTCCATTACTTAAGGGACCTAAGAAGGTC 438
                      *      **  *   *  **     ***  * * * **        **   * **** * 

consensus_1214#0      TAGATGCATGTTGACCTTCTTAGGTCCCTT 568
consensus_1214#1      AACATGCATCTAAAACTTCCTTTTTCTTC- 467
                       * ****** *  * **** *   **    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)