These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGCTAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCAGGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTTACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAGATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTAGATGCATGTTGACCTTCTTAGGTCCCTT] [+] EMBL BU805984 [CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGCTAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCAGGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTTACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAGATCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTTCTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTGAAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGTGGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAGCGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTTTAGATGCATGTTGACCTTCTTAGGTCCCTT] consensusID : consensus_1214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTGTGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAACAGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTTAAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC] [+] EMBL CA331870 [AATGGAAGTGCTGGGTGAGATGGATGCTGTCTCACTGAGATGTGTGCCTGTGTGAGCCTGTGGGTTCTAACGCGAACCGTGCCCTAGCTTTTTAAAAATAAACTAGTTTCACTCTCTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAGAGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATCTATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCCAAACAAACACACACACAAAACAGAAATTAACACAGGATCCGATTAGATACAGAATGGGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTGCAACACCCCACCCATTTCTCAAAACAACTCTCCATTACTTAAGGGACCTAAGAAGGTCAACATGCATCTAAAACTTCCTTTTTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1214#0 CACAATAGGGCCCTCACTAGGTGGTGTGACTCCCTGGGAAGGCTACGTAGCTGCAAGGGC 60 consensus_1214#1 -------------------------------------------------AATGGAAGTGC 11 ** *** ** consensus_1214#0 TAGAGGACTCATTGACTTTCTAAGGATTAGTGGTCAGGCCCCCAGCCCATGCTAGTACCA 120 consensus_1214#1 TGGGTGAGATGGATGCTGTCTCA----------CTGAGATGTGTGCCTGTGTGAGCCTGT 61 * * ** ** *** * * *** ** ** consensus_1214#0 GGGGTTTGGCCTAGCCGCTGCTGGTAGCCTCTGGCCACCACCGTGCACCACTATCGACTT 180 consensus_1214#1 GGGTTCTAACGCGAACCGTGCCC-TAGCTTTTTA-----AAAATAAACTAGTTTCACTCT 115 *** * * * * *** **** * * * * ** * * ** * consensus_1214#0 ACCCCCAGCCCCCTCTCTCTTTGGCCTGCTGGCGATGTGTCAAAACCCATTAGCACAAAG 240 consensus_1214#1 --CTAAAATAGTTATTCGGATAAATTGGCCAATAACTTGAAAGAAACAAGAGGTGTCAAG 173 * * ** * ** * ** * ** * * * *** consensus_1214#0 A--TCCGCAACTATAGAGAAGGATCATTTTAGGTTTGTCTTTCTTGCTCTCTTCTTCCTT 298 consensus_1214#1 AGGTCAGACACTACAAGTAAAGCACATGGAGGCATGATACATAATGCATC---------T 224 * ** * **** * ** * *** * * * * *** * consensus_1214#0 CTCCACGGTCTATCCCTCTCATTCCTTCTCTCTGTCTCCTCATCCTCCTCCGCCCTAGTG 358 consensus_1214#1 ATCTGCAATGAAATACAATAAATGCAAGGACCCATACTTTCTTTCTCTGTCTTCC----- 279 ** * * * * * * * * * * ** * *** * ** consensus_1214#0 AAATGAAGAGAGGAACACAGAGAGAATCGAGTAACCTTTGACAGGAGTTGTTCCAGTTGT 418 consensus_1214#1 ----AAACAAACACACACACAAAACAGAAATTAAC-----ACAGGATCCGATT-AGATAC 329 ** * * ***** * * * * **** ****** * * ** * consensus_1214#0 GGTATGTATGGCTGCGTATTGATCTGCACTGGCTTTAGGAACTATAGAGAAGAGAGCCAG 478 consensus_1214#1 AGAATG--GGATCATAGAGTCTTCAACATTTTTTCTTACAAATATACATATTG----CAA 383 * *** * * * ** ** * * * ** **** * * ** consensus_1214#0 CGAGTTGCCGCTGCTTTTAAGTCCCACACATTTTCTTTCTGGGGAAGAAAAAGGAAGTTT 538 consensus_1214#1 CACCCCACCCATTTCTCAAA-----ACAACTCTCCATTACTTAAGGGACCTAAGAAGGTC 438 * ** * * ** *** * * * ** ** * **** * consensus_1214#0 TAGATGCATGTTGACCTTCTTAGGTCCCTT 568 consensus_1214#1 AACATGCATCTAAAACTTCCTTTTTCTTC- 467 * ****** * * **** * ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |