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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[AACCCTTTGGAGGAGAGAAGAGAGCTTAATGATATTCCGTTGATTTCATCTTTGTTTGTTAATCCCCCCTGAGAAACCTGCAAACATCATGCCTTTCGATGTGAGGAGATTCGATATCTACAGGAAGGTGCCAAAAGATCTCACCCAGCCAACATACACAGGAGCGTTCATTTCCATCCTCTGCTGCGTCTTCATACTCTTCCTGTTCCTGTCTGAGCTGACTGGATTCATCGCAACAGAAATTGTGAATGAACTGTATGTAGACGACCCAGACAAAGACAGTGGTGGGAAGATAGAAGTGAGTTTAAACATCACTTTGCCAAACTTACACTGTGATTTGGTGGGCTTGGACATCCAGGATGAGATGGGGCGCCACGAGGTGGGCCACATCGAGAACTCCATGAAAATCCCCCTCAATCAGGGCGCCGGCTGTCGCTTCGAAGGAGAATTCATCATCAACAAAGTACCAGGAAACTTCCACATCTCGACACACAGCGCTTCAGCGCAGCCCCAGAACCCTGACATGACCCACTTCATCCACAAACTGGCCTTCGGGGACAAACTTCAGATGCACCAAGAAAAAGGGGCCTTTAACGCCTTGGGAGGGGCCGACCGGCTGGCATCTAACCCTCTGGCCTCACACGACTACATCCTGAAGATCGTTCCAACGGTGTACGAGGATCTGTCAGGCAAACAGAAGTTCT]
[+] EMBL CA845967 [AACCCTTTGGAGGAGAGAAGAGAGCTTAATGATATTCCGTTGATTTCATCTTTGTTTGTTAATCCCCCCTGAGAAACCTGCAAACATCATGCCTTTCGATGTGAGGAGATTCGATATCTACAGGAAGGTGCCAAAAGATCTCACCCAGCCAACATACACAGGAGCGTTCATTTCCATCCTCTGCTGCGTCTTCATACTCTTCCTGTTCCTGTCTGAGCTGACTGGATTCATCGCAACAGAAATTGTGAATGAACTGTATGTAGACGACCCAGACAAAGACAGTGGTGGGAAGATAGAAGTGAGTTTAAACATCACTTTGCCAAACTTACACTGTGATTTGGTGGGCTTGGACATCCAGGATGAGATGGGGCGCCACGAGGTGGGCCACATCGAGAACTCCATGAAAATCCCCCTCAATCAGGGCGCCGGCTGTCGCTTCGAAGGAGAATTCATCATCAACAAAGTACCAGGAAACTTCCACATCTCGACACACAGCGCTTCAGCGCAGCCCCAGAACCCTGACATGACCCACTTCATCCACAAACTGGCCTTCGGGGACAAACTTCAGATGCACCAAGAAAAAGGGGCCTTTAACGCCTTGGGAGGGGCCGACCGGCTGGCATCTAACCCTCTGGCCTCACACGACTACATCCTGAAGATCGTTCCAACGGTGTACGAGGATCTGTCAGGCAAACAGAAGTTCT]
consensusID : consensus_1228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[GAGAAGAGAGCTTAATGATATTCCGTTGATTTTAGCTTTGTTCGTTAATCCCCCCTGAGAAACCTGCAAACATCATGCCTTTCGATGTGAGGAGATTCGATATCTACAGGAAGGTGCCAAAAGATCTCACCCAGCCAACATACACAGGAGCGTTCATTTCCATCCTCTGCTGCGTCTTCATACTCTTCCTGTTCCTGTCTGAGCTGACTGGATTCATCGCAACAGAAATTGTGAATGAACTGTATGTAGACGACCCAGACAAAGACAGTGGTGGGAAGATAGAATGGTGGGCTTGGACATCCAGGATGAGATGGGGCGCCACGAGGTGGGCCACATCGAGAACTCCATGAAAATCCCCCTCAATCAGGGCGCCGGCTGTCGCTTCGAAGGAGAATTCATCATCAACAAAGTACCAGGAAACTTCCACATCTCGACACACAGCGCTTCAGCGCAGCCCCAGAACCCTGACATGACCCACTTCATCCACAAACTGGCCTTCGGGGACAAACTTCAGATGCACCAAGAAAAAGGGGCCTTTAACGC]
[+] EMBL BU806069 [GAGAAGAGAGCTTAATGATATTCCGTTGATTTTAGCTTTGTTCGTTAATCCCCCCTGAGAAACCTGCAAACATCATGCCTTTCGATGTGAGGAGATTCGATATCTACAGGAAGGTGCCAAAAGATCTCACCCAGCCAACATACACAGGAGCGTTCATTTCCATCCTCTGCTGCGTCTTCATACTCTTCCTGTTCCTGTCTGAGCTGACTGGATTCATCGCAACAGAAATTGTGAATGAACTGTATGTAGACGACCCAGACAAAGACAGTGGTGGGAAGATAGAATGGTGGGCTTGGACATCCAGGATGAGATGGGGCGCCACGAGGTGGGCCACATCGAGAACTCCATGAAAATCCCCCTCAATCAGGGCGCCGGCTGTCGCTTCGAAGGAGAATTCATCATCAACAAAGTACCAGGAAACTTCCACATCTCGACACACAGCGCTTCAGCGCAGCCCCAGAACCCTGACATGACCCACTTCATCCACAAACTGGCCTTCGGGGACAAACTTCAGATGCACCAAGAAAAAGGGGCCTTTAACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1228#0 AACCCTTTGGAGGAGAGAAGAGAGCTTAATGATATTCCGTTGATTTCATCTTTGTTTGTT 60
consensus_1228#1 --------------GAGAAGAGAGCTTAATGATATTCCGTTGATTTTAGCTTTGTTCGTT 46
******************************** * ******* ***
consensus_1228#0 AATCCCCCCTGAGAAACCTGCAAACATCATGCCTTTCGATGTGAGGAGATTCGATATCTA 120
consensus_1228#1 AATCCCCCCTGAGAAACCTGCAAACATCATGCCTTTCGATGTGAGGAGATTCGATATCTA 106
************************************************************
consensus_1228#0 CAGGAAGGTGCCAAAAGATCTCACCCAGCCAACATACACAGGAGCGTTCATTTCCATCCT 180
consensus_1228#1 CAGGAAGGTGCCAAAAGATCTCACCCAGCCAACATACACAGGAGCGTTCATTTCCATCCT 166
************************************************************
consensus_1228#0 CTGCTGCGTCTTCATACTCTTCCTGTTCCTGTCTGAGCTGACTGGATTCATCGCAACAGA 240
consensus_1228#1 CTGCTGCGTCTTCATACTCTTCCTGTTCCTGTCTGAGCTGACTGGATTCATCGCAACAGA 226
************************************************************
consensus_1228#0 AATTGTGAATGAACTGTATGTAGACGACCCAGACAAAGACAGTGGTGGGAAGATAGAAGT 300
consensus_1228#1 AATTGTGAATGAACTGTATGTAGACGACCCAGACAAAGACAGTGGTGGGAAGATAGAA-- 284
**********************************************************
consensus_1228#0 GAGTTTAAACATCACTTTGCCAAACTTACACTGTGATTTGGTGGGCTTGGACATCCAGGA 360
consensus_1228#1 --------------------------------------TGGTGGGCTTGGACATCCAGGA 306
**********************
consensus_1228#0 TGAGATGGGGCGCCACGAGGTGGGCCACATCGAGAACTCCATGAAAATCCCCCTCAATCA 420
consensus_1228#1 TGAGATGGGGCGCCACGAGGTGGGCCACATCGAGAACTCCATGAAAATCCCCCTCAATCA 366
************************************************************
consensus_1228#0 GGGCGCCGGCTGTCGCTTCGAAGGAGAATTCATCATCAACAAAGTACCAGGAAACTTCCA 480
consensus_1228#1 GGGCGCCGGCTGTCGCTTCGAAGGAGAATTCATCATCAACAAAGTACCAGGAAACTTCCA 426
************************************************************
consensus_1228#0 CATCTCGACACACAGCGCTTCAGCGCAGCCCCAGAACCCTGACATGACCCACTTCATCCA 540
consensus_1228#1 CATCTCGACACACAGCGCTTCAGCGCAGCCCCAGAACCCTGACATGACCCACTTCATCCA 486
************************************************************
consensus_1228#0 CAAACTGGCCTTCGGGGACAAACTTCAGATGCACCAAGAAAAAGGGGCCTTTAACGCCTT 600
consensus_1228#1 CAAACTGGCCTTCGGGGACAAACTTCAGATGCACCAAGAAAAAGGGGCCTTTAACGC--- 543
*********************************************************
consensus_1228#0 GGGAGGGGCCGACCGGCTGGCATCTAACCCTCTGGCCTCACACGACTACATCCTGAAGAT 660
consensus_1228#1 ------------------------------------------------------------
consensus_1228#0 CGTTCCAACGGTGTACGAGGATCTGTCAGGCAAACAGAAGTTCT 704
consensus_1228#1 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |