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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[GTCAGCAGTCGGCGGTGGGAACCATGGTGTCTTTGGCAGCCTTCTGTGTTGCGCTAGTGGTTTCTCTCTGTGGAAATATCGCAGCTGACAAAAAATTAGCATACGTGACTGTGTTGTTTCGACATGGTGACCGCTCACCAATAAGAGCCTATCCTACGGACCCCTACCAGGAGAAGGACTGGCCGCGAGGATTTGGGCAGCTGTCGCAGAAGGGAATGAGGCAACACTATGAGCTTGGCAGTTTCCTGAGGAATCGCTATAAAGGATTTCTCAATGAATCCTATGAAAGACATGAGATTTCAGTTCGAAGTACAGATTATGATCGCACCCTGATGAGCGCGGAAGCCAATCTTGCAGGCCTCTATCCACCTCCAAGTCAGCAGACTTTCAAACCAGACCTAAAATGGCAGCCGATACCCGTGCACACCGTACCGTTAAGTGAAGACAGGCTTCTCTCTTTTCCGATTGGTGAGTGTCCTCGCTACAAACAGTTGATGGAGGAGACGGAACACACAGAGGAATTTGTTAATATCACCAAAAAATACGAGGACACTATAGAGTGGGTG]
[+] EMBL BU806145 [GTCAGCAGTCGGCGGTGGGAACCATGGTGTCTTTGGCAGCCTTCTGTGTTGCGCTAGTGGTTTCTCTCTGTGGAAATATCGCAGCTGACAAAAAATTAGCATACGTGACTGTGTTGTTTCGACATGGTGACCGCTCACCAATAAGAGCCTATCCTACGGACCCCTACCAGGAGAAGGACTGGCCGCGAGGATTTGGGCAGCTGTCGCAGAAGGGAATGAGGCAACACTATGAGCTTGGCAGTTTCCTGAGGAATCGCTATAAAGGATTTCTCAATGAATCCTATGAAAGACATGAGATTTCAGTTCGAAGTACAGATTATGATCGCACCCTGATGAGCGCGGAAGCCAATCTTGCAGGCCTCTATCCACCTCCAAGTCAGCAGACTTTCAAACCAGACCTAAAATGGCAGCCGATACCCGTGCACACCGTACCGTTAAGTGAAGACAGGCTTCTCTCTTTTCCGATTGGTGAGTGTCCTCGCTACAAACAGTTGATGGAGGAGACGGAACACACAGAGGAATTTGTTAATATCACCAAAAAATACGAGGACACTATAGAGTGGGTG]
consensusID : consensus_1240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[AAAAATACGAGGACACTATAGAGTGGGTGAGGAATAAAACAGGACAGAATGACACTGATGTGAAGTCAGTCTGGAGCGTGTATGATACGCTTTTCTGTGAGTCCCAGCATAACTTGACCTTACCCGACTGGGTGACTCCAGACGTATTGGAGAAGCTCGAAGTGCTCAGGGACTTTTCATTGGAGGTTCCATTTGGGATCTACAAACAGCAAGAAAAGAGCAGGCTTCAGGGAGGTGTCCTTTTGGGTGAAATAGTGAAGAATCTTTCCAAGATGGCCACCCCAGACCCAAAGCAAAGGTTAAAAATGATGATGCTGTCGGCGCATGACACCACTGTCATCGCTCTTCAAGTCAGCCTGGATGTGTTTAACAGGAAACAGCCTCCTTATGCTGCCTGTCACATATTTGAACTGTACACAAACGACAATGGCTCCGCTTTCAGTATGATGGTTTACCCGGATGACAGCACGGTGGATCCGTCCCC]
[+] EMBL FR0061352 [AAAAATACGAGGACACTATAGAGTGGGTGAGGAATAAAACAGGACAGAATGACACTGATGTGAAGTCAGTCTGGAGCGTGTATGATACGCTTTTCTGTGAGTCCCAGCATAACTTGACCTTACCCGACTGGGTGACTCCAGACGTATTGGAGAAGCTCGAAGTGCTCAGGGACTTTTCATTGGAGGTTCCATTTGGGATCTACAAACAGCAAGAAAAGAGCAGGCTTCAGGGAGGTGTCCTTTTGGGTGAAATAGTGAAGAATCTTTCCAAGATGGCCACCCCAGACCCAAAGCAAAGGTTAAAAATGATGATGCTGTCGGCGCATGACACCACTGTCATCGCTCTTCAAGTCAGCCTGGATGTGTTTAACAGGAAACAGCCTCCTTATGCTGCCTGTCACATATTTGAACTGTACACAAACGACAATGGCTCCGCTTTCAGTATGATGGTTTACCCGGATGACAGCACGGTGGATCCGTCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1240#0 GTCAGCAGTCGGCGGTGGGAACCATGGTGTCTTTGGCAGCCTTCTGTGTTGCGCTAGTGG 60
consensus_1240#1 ------------------------------------------------------------
consensus_1240#0 TTTCTCTCTGTGGAAATATCGCAGCTGACAAAAAATTAGCATACGTGACTGTGTTGTTTC 120
consensus_1240#1 -AAAAATACGAGGACACTATAGAGTGGGTGAGGAATAAA---ACAGGACAGAATGACACT 56
* * *** * ** * * *** * ** *** * *
consensus_1240#0 GACATGGTGACCGCTCACCAATAAGAGCCTATCCTACGGACCCCTACCAGGAGAAGGACT 180
consensus_1240#1 GATGTGAAGTCAGTCTG-----GAGCGTGTATGATACGCTTTTCTGTGAGTCCCAGCATA 111
** ** * * * ** * *** **** ** ** ** *
consensus_1240#0 GGCCGCGAGGATTTGGGCAGCTGTCGCAGAAGGGAATGAGGCAACACTATGAGCTT-GGC 239
consensus_1240#1 ACTTGACCTTACCCGACTGGGTGACTCCAGACGTATTGGAGAAGCTCGAAGTGCTCAGGG 171
* * * * ** * * * * * ** * * * * * * *** **
consensus_1240#0 AGTTTCCTGAGGAATCGCTATAAAGGATTTCTCAATGAATCCTATGAAAGACATGAGATT 299
consensus_1240#1 ACTTTTCATTGGAGGTTCCATTTGGGATCT----ACAAACAGCAAGAAA-AGAGCAGGCT 226
* *** * *** * ** **** * * ** * **** * * ** *
consensus_1240#0 TCAGTTCGAAGTACAGATTATGATCGCACCCTGATGAGCGCGG--AAGCCAATCTTGCAG 357
consensus_1240#1 TCAGG--GAGGTGTCCTTTTGGGTGAAATAGTGAAGAATCTTTCCAAGATGGCCACCCCA 284
**** ** ** ** * * * *** ** *** * *
consensus_1240#0 GCCTCTATCCAC---CTCCAAGTCAGCAGACTTTCAAACCAGACCTAAAATGGCAGCCGA 414
consensus_1240#1 GACCCAAAGCAAAGGTTAAAAATGATGATGCTGTCGGCGCATGACACCACTGTCA-TCGC 343
* * * * ** * ** * * * ** ** ** * * ** ** **
consensus_1240#0 TACCCGTGCACACC---GTACCGTTAAGTGAAGACAGGCTTCTCTCTTTTCCGATTGGTG 471
consensus_1240#1 TCTTCAAGTCAGCCTGGATGTGTTTAACAGGAAACAGCCTCCT---TATGCTGCCTGTCA 400
* * * ** * **** * * **** ** ** * * * * **
consensus_1240#0 AGTGTCCTCGCTACAAACAGTTGATGGAGGAGACGGAACACACAGAGGAATTTGTTAATA 531
consensus_1240#1 CATATTTGAACTGTACACAAACGACAATGGCTCCGCTTTCAGTATGATGGTTTACCCGGA 460
* * ** * *** ** ** ** * *** *
consensus_1240#0 TCACCAAAAAATACGAGGACACTATAGAGTGGGTG 566
consensus_1240#1 TGACAGCACGGTGGATCCGTCCCC----------- 484
* ** * * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |