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Takifugu rubripes
cluster # 1246 cluster # 1246       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1246#0 length = 605 sequences # 1  
 consensus_1246#1 length = 238 sequences # 1  
consensusID : consensus_1246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence 
                              [TTTTGGTCAGCGACTGAAATCTGTCAGATCAGCGGACTGCGAGTTCCTTAATACCTTTCCAAATTTTTCCCCGCGTTGTTTTTTTGACTGCATCGGAGGTTTAAGCGTGGCTTTGGGTGTCCGCTTTAGGATTGTAACTTCTTGTCGTCCGTGTCCCGAGGAAACTGTAAAGAATGTCAAACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGTAAAGCAGTCCACATGGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGATTCTGTGTTATCAACGCCGGTGTCCTGTATGTATACTTCAGCAGTTTTCAGCAGATTGATGAAGAAGACTATGGTGGAACATGGGAACTCACAAAAGAGGGCTTCATGACATCTTTTGCTCTGTTTCTGGTGGTGTGGATAATCTTTTACACGGCTCTACACTTTGACTGAGGGGGATCCAATGAATCAGTTGGACACTAAATACAATTATTTCTTCAGAAGTAAAATGTCAAGACAGATGGACTGAGCTGTTAATGCGCCTACATACACACAGTATGACTTTGCATTGTACCACGCATCACTGGAATCCTCATGATCGAGAT]

[+] EMBL BU806171             [TTTTGGTCAGCGACTGAAATCTGTCAGATCAGCGGACTGCGAGTTCCTTAATACCTTTCCAAATTTTTCCCCGCGTTGTTTTTTTGACTGCATCGGAGGTTTAAGCGTGGCTTTGGGTGTCCGCTTTAGGATTGTAACTTCTTGTCGTCCGTGTCCCGAGGAAACTGTAAAGAATGTCAAACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGTAAAGCAGTCCACATGGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGATTCTGTGTTATCAACGCCGGTGTCCTGTATGTATACTTCAGCAGTTTTCAGCAGATTGATGAAGAAGACTATGGTGGAACATGGGAACTCACAAAAGAGGGCTTCATGACATCTTTTGCTCTGTTTCTGGTGGTGTGGATAATCTTTTACACGGCTCTACACTTTGACTGAGGGGGATCCAATGAATCAGTTGGACACTAAATACAATTATTTCTTCAGAAGTAAAATGTCAAGACAGATGGACTGAGCTGTTAATGCGCCTACATACACACAGTATGACTTTGCATTGTACCACGCATCACTGGAATCCTCATGATCGAGAT]




>consensus_1246#0
TTTTGGTCAGCGACTGAAATCTGTCAGATCAGCGGACTGCGAGTTCCTTAATACCTTTCC
AAATTTTTCCCCGCGTTGTTTTTTTGACTGCATCGGAGGTTTAAGCGTGGCTTTGGGTGT
CCGCTTTAGGATTGTAACTTCTTGTCGTCCGTGTCCCGAGGAAACTGTAAAGAATGTCAA
ACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGTAAAGCAGTCCACAT
GGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGATTCTGTGTTATCAACGCC
GGTGTCCTGTATGTATACTTCAGCAGTTTTCAGCAGATTGATGAAGAAGACTATGGTGGA
ACATGGGAACTCACAAAAGAGGGCTTCATGACATCTTTTGCTCTGTTTCTGGTGGTGTGG
ATAATCTTTTACACGGCTCTACACTTTGACTGAGGGGGATCCAATGAATCAGTTGGACAC
TAAATACAATTATTTCTTCAGAAGTAAAATGTCAAGACAGATGGACTGAGCTGTTAATGC
GCCTACATACACACAGTATGACTTTGCATTGTACCACGCATCACTGGAATCCTCATGATC
GAGAT

consensusID : consensus_1246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence 
                              [TTTGGTGACTACATCGTAGGTTTAAGCGTGCCTTTGGGTGTCCGCTTTAGGATTGTAACTTCTTGTCGTACGCGTCCCGAGGAAACTGTAAAGAATGTCAAACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGAAAAGCAGTCCACATGGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGGATGAGCTTTTAGATGTGATTTACTGGCTTCGGCAT]

[+] EMBL FR0059499            [TTTGGTGACTACATCGTAGGTTTAAGCGTGCCTTTGGGTGTCCGCTTTAGGATTGTAACTTCTTGTCGTACGCGTCCCGAGGAAACTGTAAAGAATGTCAAACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGAAAAGCAGTCCACATGGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGGATGAGCTTTTAGATGTGATTTACTGGCTTCGGCAT]




>consensus_1246#1
TTTGGTGACTACATCGTAGGTTTAAGCGTGCCTTTGGGTGTCCGCTTTAGGATTGTAACT
TCTTGTCGTACGCGTCCCGAGGAAACTGTAAAGAATGTCAAACAATTCAAAGCGGAAAGA
AGAAAGTCATCAGCTGAATGGGGGTGAAAAGCAGTCCACATGGAGCAAAGCCTTCAACAG
TAATGCTGTCTGGGAAGAGAAGGATGAGCTTTTAGATGTGATTTACTGGCTTCGGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1246#0      TTTTGGTCAGCGACTGAAATCTGTCAGATCAGCGGACTGCGAGTTCCTTAATACCTTTCC 60
consensus_1246#1      ------------------------------------------------------------
                                                                                  

consensus_1246#0      AAATTTTTCCCCGCGTTGTTTTTTTGACTGCATCGGAGGTTTAAGCGTGGCTTTGGGTGT 120
consensus_1246#1      -------------------TTTGGTGACTACATCGTAGGTTTAAGCGTGCCTTTGGGTGT 41
                                         ***  ***** ***** ************* **********

consensus_1246#0      CCGCTTTAGGATTGTAACTTCTTGTCGTCCGTGTCCCGAGGAAACTGTAAAGAATGTCAA 180
consensus_1246#1      CCGCTTTAGGATTGTAACTTCTTGTCGTACGCGTCCCGAGGAAACTGTAAAGAATGTCAA 101
                      **************************** ** ****************************

consensus_1246#0      ACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGTAAAGCAGTCCACAT 240
consensus_1246#1      ACAATTCAAAGCGGAAAGAAGAAAGTCATCAGCTGAATGGGGGTGAAAAGCAGTCCACAT 161
                      ********************************************* **************

consensus_1246#0      GGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGATTCTGTGTTATCAACGCC 300
consensus_1246#1      GGAGCAAAGCCTTCAACAGTAATGCTGTCTGGGAAGAGAAGGA--TGAGCTTTTAGATGT 219
                      *****************************************    ** * * * *     

consensus_1246#0      GGTGTCCTGTATGTATACTTCAGCAGTTTTCAGCAGATTGATGAAGAAGACTATGGTGGA 360
consensus_1246#1      GATTTACTG-------GCTTCGGCAT---------------------------------- 238
                      * * * ***        **** ***                                   

consensus_1246#0      ACATGGGAACTCACAAAAGAGGGCTTCATGACATCTTTTGCTCTGTTTCTGGTGGTGTGG 420
consensus_1246#1      ------------------------------------------------------------
                                                                                  

consensus_1246#0      ATAATCTTTTACACGGCTCTACACTTTGACTGAGGGGGATCCAATGAATCAGTTGGACAC 480
consensus_1246#1      ------------------------------------------------------------
                                                                                  

consensus_1246#0      TAAATACAATTATTTCTTCAGAAGTAAAATGTCAAGACAGATGGACTGAGCTGTTAATGC 540
consensus_1246#1      ------------------------------------------------------------
                                                                                  

consensus_1246#0      GCCTACATACACACAGTATGACTTTGCATTGTACCACGCATCACTGGAATCCTCATGATC 600
consensus_1246#1      ------------------------------------------------------------
                                                                                  

consensus_1246#0      GAGAT 605
consensus_1246#1      -----


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)