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Takifugu rubripes
cluster # 1248 cluster # 1248       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1248#0 length = 452 sequences # 1  
 consensus_1248#1 length = 272 sequences # 1  
consensusID : consensus_1248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence 
                              [GTTGATGCGCCCTGGAAGCTGCGTTTATTCTGCCGTGTTTTAACCGCTCCTCTCCGCCTGCGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGCTGTGACAGCCGGACTGACCGGATACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGCTTAGCTCAGCTCAGCCCAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTCCGTCTTTCACGTTTTTCAGGCAGTCATGGCTGGGAAGAGCCGCCACTTCCTGACTGGGAATATCACCACCTGCCTGCTGCTCCTGGCCGCGCACGCGTGTGCACGGCCCGCAAACATGTCGGCCCTGAAGGACAAAGCTCCAGTCAGCAAAGACGAGAACGAGATTCTCCCCCCGGACCACCTCAACGCCGTGAAAATGGAGCTGGACGGGC]

[+] EMBL BU806183             [GTTGATGCGCCCTGGAAGCTGCGTTTATTCTGCCGTGTTTTAACCGCTCCTCTCCGCCTGCGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGCTGTGACAGCCGGACTGACCGGATACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGCTTAGCTCAGCTCAGCCCAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTCCGTCTTTCACGTTTTTCAGGCAGTCATGGCTGGGAAGAGCCGCCACTTCCTGACTGGGAATATCACCACCTGCCTGCTGCTCCTGGCCGCGCACGCGTGTGCACGGCCCGCAAACATGTCGGCCCTGAAGGACAAAGCTCCAGTCAGCAAAGACGAGAACGAGATTCTCCCCCCGGACCACCTCAACGCCGTGAAAATGGAGCTGGACGGGC]




>consensus_1248#0
GTTGATGCGCCCTGGAAGCTGCGTTTATTCTGCCGTGTTTTAACCGCTCCTCTCCGCCTG
CGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGCTGTGACAGCCGGACTGACCGGAT
ACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGC
TTAGCTCAGCTCAGCCCAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTC
CGTCTTTCACGTTTTTCAGGCAGTCATGGCTGGGAAGAGCCGCCACTTCCTGACTGGGAA
TATCACCACCTGCCTGCTGCTCCTGGCCGCGCACGCGTGTGCACGGCCCGCAAACATGTC
GGCCCTGAAGGACAAAGCTCCAGTCAGCAAAGACGAGAACGAGATTCTCCCCCCGGACCA
CCTCAACGCCGTGAAAATGGAGCTGGACGGGC

consensusID : consensus_1248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence 
                              [TAACCGCTCCTCTCCGCCTGGGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGGTGTGACAGCCGGACTGACCGGATACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGCTTAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTCCGTCTTTCACGTTTTTCAGGCAGTCATGGGTGGGAAGAGCCGCCACTTCCTGACTGGGAATATCACCACCTGCCTGCTGCTCCTGGC]

[+] EMBL FR0057463            [TAACCGCTCCTCTCCGCCTGGGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGGTGTGACAGCCGGACTGACCGGATACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGCTTAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTCCGTCTTTCACGTTTTTCAGGCAGTCATGGGTGGGAAGAGCCGCCACTTCCTGACTGGGAATATCACCACCTGCCTGCTGCTCCTGGC]




>consensus_1248#1
TAACCGCTCCTCTCCGCCTGGGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGGTGT
GACAGCCGGACTGACCGGATACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAG
TTAGCTTAGCTTAGCTTAGCTTAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCT
TCTTCCGTCTTTCACGTTTTTCAGGCAGTCATGGGTGGGAAGAGCCGCCACTTCCTGACT
GGGAATATCACCACCTGCCTGCTGCTCCTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1248#0      GTTGATGCGCCCTGGAAGCTGCGTTTATTCTGCCGTGTTTTAACCGCTCCTCTCCGCCTG 60
consensus_1248#1      ----------------------------------------TAACCGCTCCTCTCCGCCTG 20
                                                              ********************

consensus_1248#0      CGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGCTGTGACAGCCGGACTGACCGGAT 120
consensus_1248#1      GGCTGCTGCGGTTGAGCCACGTATACAGGAACTGCGGTGTGACAGCCGGACTGACCGGAT 80
                       *********************************** ***********************

consensus_1248#0      ACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGC 180
consensus_1248#1      ACTCCAGCTGTTGGGGGCGTGCAGCTCTCGGTAGCCGCAGTTAGCTTAGCTTAGCTTAGC 140
                      ************************************************************

consensus_1248#0      TTAGCTCAGCTCAGCCCAGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTC 240
consensus_1248#1      TT---------------AGCTCAGCCCAGCTGCAGAGCTTCTCTGTCGTGTCGCTTCTTC 185
                      **               *******************************************

consensus_1248#0      CGTCTTTCACGTTTTTCAGGCAGTCATGGCTGGGAAGAGCCGCCACTTCCTGACTGGGAA 300
consensus_1248#1      CGTCTTTCACGTTTTTCAGGCAGTCATGGGTGGGAAGAGCCGCCACTTCCTGACTGGGAA 245
                      ***************************** ******************************

consensus_1248#0      TATCACCACCTGCCTGCTGCTCCTGGCCGCGCACGCGTGTGCACGGCCCGCAAACATGTC 360
consensus_1248#1      TATCACCACCTGCCTGCTGCTCCTGGC--------------------------------- 272
                      ***************************                                 

consensus_1248#0      GGCCCTGAAGGACAAAGCTCCAGTCAGCAAAGACGAGAACGAGATTCTCCCCCCGGACCA 420
consensus_1248#1      ------------------------------------------------------------
                                                                                  

consensus_1248#0      CCTCAACGCCGTGAAAATGGAGCTGGACGGGC 452
consensus_1248#1      --------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)