These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTCGTTTTTATATTTTTGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGACGTGTTGGTGAAAGTTAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAATGCTAACTGTAGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGGTTGAACAGGGGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA] [+] EMBL CA589514 [GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTCGTTTTTATATTTTTGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGACGTGTTGGTGAAAGTTAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAATGCTAACTGTAGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGGTTGAACAGGGGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA] consensusID : consensus_1250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAGGTGATGTTACAGGTTATACTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATTTTTAGTGATTCCCGATCGCGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGTGGCTCTTGTCAGGGCCGGACAGGTAACGGTACCGTCTGTGTGGCAGGTTGAACAGGGGGACATGAGTGGCCCCTAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACAGTCA] [+] EMBL BU806194 [CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAGGTGATGTTACAGGTTATACTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATTTTTAGTGATTCCCGATCGCGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGTGGCTCTTGTCAGGGCCGGACAGGTAACGGTACCGTCTGTGTGGCAGGTTGAACAGGGGGACATGAGTGGCCCCTAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1250#0 GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTC-GTTTTTATATTT 59 consensus_1250#1 ------------------CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAG 42 *** * * * *** * *** * **** consensus_1250#0 TTGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGAC--------GTGTT 111 consensus_1250#1 GTGATGTTACAGGTTATACTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATT 102 *** * * ** * * *** * * * * * ** ** consensus_1250#0 GGTGAAAGTTAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAAT 171 consensus_1250#1 TTTAGTGATTCCCGATCGCGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGT 162 * ** * * * *** * * * *** * * * **** * * consensus_1250#0 GCTAACTGTAGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGG 231 consensus_1250#1 GGCTCTTGTCAGGGCCGGACAGGTAA--------CGGTACCGTCTG-----TGTGGCAGG 209 * *** * * * *** **** * ** ** * **** consensus_1250#0 TTGAACAGGGGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGG 291 consensus_1250#1 TTGAACAGGGGGACATGAGTGGCCCCTAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGG 269 ************************** ********************************* consensus_1250#0 TGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACAC 351 consensus_1250#1 TGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACAC 329 ************************************************************ consensus_1250#0 AGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGA 411 consensus_1250#1 AGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGA 389 ************************************************************ consensus_1250#0 TGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA---- 457 consensus_1250#1 TGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACAGTCA 439 ********************************************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |