These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CTAAGTTGCTTGAGTTGTGATTGAGAGTTTCTGGCCCGATTCTGCCTCCTACATGTCTAAGTGTCGTTGGGTGAGATTTTAAACCCCCTCCTGAAGCTGCCTCTCCAGCGTATAAAGGTTTCTTCTGCATTTATGGAGAAAGTTGTTGGCCCACACAGCTCCTCAAGTGTGAGGCGAACCAAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACGAGATGTCAACACAGCTATAATGGAGCTGCTGATCATGGCCTACGCCCTCAAGACCTCCTGTGCTAAGAACATCATTGGAGTGATTCCTTACTTCCCCTACAGCAAACAGTGCAAGATGAGAAAAAGAGGCTCGATAGTGAGCAAGCTCTTAGCGTCCATGCTGGCGAAAGCAGGTTTGACACACATCATCACCATGGACTTGCACCAGAAGGAGATTCAGGGTTTCTTCACCTTCCCAGTGGACAACCTGCGCGCCTCTCCTTTCCTGATTCAGTACATCCAGGAAGAGATTCCTGATTACAGAAATGCAATAATTGTGGCAAAGTCTCCCTCCGCAGCTAAAAGGGCTCAGTCCTACGCTGAGC] [+] EMBL BU807626 [CTAAGTTGCTTGAGTTGTGATTGAGAGTTTCTGGCCCGATTCTGCCTCCTACATGTCTAAGTGTCGTTGGGTGAGATTTTAAACCCCCTCCTGAAGCTGCCTCTCCAGCGTATAAAGGTTTCTTCTGCATTTATGGAGAAAGTTGTTGGCCCACACAGCTCCTCAAGTGTGAGGCGAACCAAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACGAGATGTCAACACAGCTATAATGGAGCTGCTGATCATGGCCTACGCCCTCAAGACCTCCTGTGCTAAGAACATCATTGGAGTGATTCCTTACTTCCCCTACAGCAAACAGTGCAAGATGAGAAAAAGAGGCTCGATAGTGAGCAAGCTCTTAGCGTCCATGCTGGCGAAAGCAGGTTTGACACACATCATCACCATGGACTTGCACCAGAAGGAGATTCAGGGTTTCTTCACCTTCCCAGTGGACAACCTGCGCGCCTCTCCTTTCCTGATTCAGTACATCCAGGAAGAGATTCCTGATTACAGAAATGCAATAATTGTGGCAAAGTCTCCCTCCGCAGCTAAAAGGGCTCAGTCCTACGCTGAGC] consensusID : consensus_1270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [ATTATTTTAGCGGTAGTTCTAGCGCTTTTTATTTGGCACAAACGGTTATTAATAAAGCATTAAAAACATTTCGTTCTTTTACGTCAAAGACAAAATTTTGTTGTTGCGAAAGGACGCTATCAGCTCAAGTCAGTGCCAGTTGCTAGCGCTAGCAAGATAGTCGGCTAGCTACAACGTCATAAGGAGTCGGAAACTAAATCATTTTTTGAATAAAAGGGATACTTCTGCCATTTCCAAGGACGATGAATGCCCCTAAAAGTGGTTATCGAGTCTTCTCCGCAAATTCATCTGTTGCGTGTACAGAATTGGCCAAGAAAATAACAGAACGGCTTGGAGTTGAACTTGGCAAATCTGTCGTTTTTCAGGAGTCCAACAGAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACG] [+] EMBL BU806373 [ATTATTTTAGCGGTAGTTCTAGCGCTTTTTATTTGGCACAAACGGTTATTAATAAAGCATTAAAAACATTTCGTTCTTTTACGTCAAAGACAAAATTTTGTTGTTGCGAAAGGACGCTATCAGCTCAAGTCAGTGCCAGTTGCTAGCGCTAGCAAGATAGTCGGCTAGCTACAACGTCATAAGGAGTCGGAAACTAAATCATTTTTTGAATAAAAGGGATACTTCTGCCATTTCCAAGGACGATGAATGCCCCTAAAAGTGGTTATCGAGTCTTCTCCGCAAATTCATCTGTTGCGTGTACAGAATTGGCCAAGAAAATAACAGAACGGCTTGGAGTTGAACTTGGCAAATCTGTCGTTTTTCAGGAGTCCAACAGAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1270#0 CTAAGTTGCTTGAGTTGTGATTGAGAGTTTCTGGCCCGATTCTGCCTCCTACATGTCTAA 60 consensus_1270#1 ----ATTATTTTAGCGGTAG--------TTCTAGCGCT-TTTTATTTGGCACA-----AA 42 ** ** ** ** **** ** * ** * * *** ** consensus_1270#0 GTGTCGTTGGGTGAGATTTTAAACCCCCTCCTGAAGCTGCCTCTCCAGCGTATAAAGGTT 120 consensus_1270#1 CGGTTATTAATAAAGCATTAAAAACATTTCGTT------CTTTTACGTCAAAGACAAAAT 96 ** ** ** ** *** * ** * * * * * * * * * * consensus_1270#0 TCTTCTGCATTTATGGAGAAAGTTGTTGGCCCACACAGCTCCTCAAGTGTGAGGCGAACC 180 consensus_1270#1 TTTGTTG--TTGCGAAAGGACGCTATCAGCTCAAGTCAGTGC-CAGTTGCTAGCGCTAGC 153 * * ** ** ** * * * * ** ** * * ** ** ** * * consensus_1270#0 AAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGA 240 consensus_1270#1 AAGATAGTCGGCTAGCTACAACGTCATAAGGAGTCGG--AAACTAAAT-CATTTTTTGAA 210 **** * ** * * * ** ** ** ** * **** * **** ** * consensus_1270#0 CCATTCCACGAGATGTCAACACAGCTATAATGGAGCTGCTGATCATGGCCTACGCCCTCA 300 consensus_1270#1 TAA----AAGGGAT------ACTTCTGCCAT-----TTCCAAGGACGATGAATGCCCCTA 255 * * * *** ** ** ** * * * * * * **** * consensus_1270#0 AGACCTCCTGTGCTAAGAACATCATTGGAGTGATTCCTTACTTCCCCTACAGCAAACAGT 360 consensus_1270#1 AAA------GTGGTTATCGAGTCTTCTCCGCAAATTCATCTGTTGCGTGTACAGAATTGG 309 * * *** * * ** * * * * * * * * * * ** * consensus_1270#0 GCAAGATGAGAAAAAGA-GGCTCGATAGTGAGCAAGCTCTTAGCGTCCATGCTGGCGAAA 419 consensus_1270#1 CCAAGAAAATAACAGAACGGCTTGGAGTTGAAC------TTGGCAAATCTGTCGTTTTTC 363 ***** * ** * * **** * *** * ** ** ** * consensus_1270#0 GCAGGTTTGACACACATCATCACCATGGACTTGCACCAGAAGGAGATTCAGGGTTTCTTC 479 consensus_1270#1 AGGAGTCCAACAGAGAA-ACCCGAGTGGA--TGTAAAAGAATCAG-TTCGTGGACAGACT 419 ** *** * * * * **** ** * **** ** *** ** consensus_1270#0 ACCTTCCCAGTGGACAAC-CTGCGCGCCTCTCCTTTCCTGATTCAGTACATCCAGGAAGA 538 consensus_1270#1 ATCTTCATTATTCAGACCATTCCACG---------------------------------- 445 * **** * * * * * * ** consensus_1270#0 GATTCCTGATTACAGAAATGCAATAATTGTGGCAAAGTCTCCCTCCGCAGCTAAAAGGGC 598 consensus_1270#1 ------------------------------------------------------------ consensus_1270#0 TCAGTCCTACGCTGAGC 615 consensus_1270#1 ----------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |