These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGAGCGAGGTGGAGCCGCAGGTCGTGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCTCCAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTACCTGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGGCGTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTACGGCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGCCATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAACCCGTGGTCATGAAAATTA] [+] EMBL BU806386 [GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGAGCGAGGTGGAGCCGCAGGTCGTGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCTCCAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTACCTGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGGCGTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTACGGCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGCCATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAACCCGTGGTCATGAAAATTA] consensusID : consensus_1271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CATTCTTGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGATCAAGGTGTAGCCGCACGCTCGCGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTC] [+] EMBL FR0058870 [CATTCTTGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGATCAAGGTGTAGCCGCACGCTCGCGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1271#0 GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAG 60 consensus_1271#1 ------------------------------CATTCTTGAAAACAAGTGACAGTCATGAAG 30 ***** *********************** consensus_1271#0 ACGCTCCAAAGGAGCGAGGTGGAGCCGCAGG-TCGTGAGCAGCGCTGATGCCAACAGGAG 119 consensus_1271#1 ACGCTCCAAAGGATCAAGGTGTAGCCGCACGCTCGCGAGCAGCGCTGATGCCAACAGGAG 90 ************* * ***** ******* * *** ************************ consensus_1271#0 CCACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCT 179 consensus_1271#1 CCACGAGTAGAGCAGCAGCATCATGGGGAGG----------------------------- 121 ******************************* consensus_1271#0 CCAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGC 239 consensus_1271#1 ---------------------------------------------ATCAACTTCTCCTGC 136 *************** consensus_1271#0 CTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACG 299 consensus_1271#1 CTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACG 196 ************************************************************ consensus_1271#0 CCGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTAC 359 consensus_1271#1 CCGTTCCCCAGACAGCTCCTCTTC------------------------------------ 220 ************************ consensus_1271#0 CTGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGG 419 consensus_1271#1 ------------------------------------------------------------ consensus_1271#0 CGTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTAC 479 consensus_1271#1 ------------------------------------------------------------ consensus_1271#0 GGCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGC 539 consensus_1271#1 ------------------------------------------------------------ consensus_1271#0 CATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAA 599 consensus_1271#1 ------------------------------------------------------------ consensus_1271#0 CCCGTGGTCATGAAAATTA 618 consensus_1271#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |