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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CTACCTGGCGGGTCTGTCGGAACTGGGACAGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGGCAGGGTCCACCCCCCCAGGAACAACAGAGGAGCACCTCCACTATGCCAAGAAGCTGTACGACTCAGCCTTCCACCCCGACACGGGAGACCGCATGAACCTCATCGGCCGCATGTCCTTCCAGGTCCCTGGAGGCATGGCCATCACCGGCTTCATGCTGCAGTTCTACAGGACAGTTCCTGCTGTGGTGTTCTGGCAGTGGGTGAATCAGTCCTTCAACGCGCTGGTCAACTACACCAACCGGAACGCCGCTTCCCCAATCACCCCCAAGCAAATAGGAGTGGCCTATATCACAGCCACCAGCACGGCGTTGGCAACAGCGGTGGGACTCAACCTCTACACAAAGAAAGCTCCT]
[+] EMBL BU806538 [CTACCTGGCGGGTCTGTCGGAACTGGGACAGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGGCAGGGTCCACCCCCCCAGGAACAACAGAGGAGCACCTCCACTATGCCAAGAAGCTGTACGACTCAGCCTTCCACCCCGACACGGGAGACCGCATGAACCTCATCGGCCGCATGTCCTTCCAGGTCCCTGGAGGCATGGCCATCACCGGCTTCATGCTGCAGTTCTACAGGACAGTTCCTGCTGTGGTGTTCTGGCAGTGGGTGAATCAGTCCTTCAACGCGCTGGTCAACTACACCAACCGGAACGCCGCTTCCCCAATCACCCCCAAGCAAATAGGAGTGGCCTATATCACAGCCACCAGCACGGCGTTGGCAACAGCGGTGGGACTCAACCTCTACACAAAGAAAGCTCCT]
consensusID : consensus_1284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[GTGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGTAAGGGAGGGTTTTCCCTCCGTGAACGGCTTCTTTCCACCATCGATTCCTCCTCCACCACCGCTGGGTTCCTCCTGATGCCAAAGTGAAGCTGGAGGCCACCAAGGGCTTTACAGATCTGGGAA]
[+] EMBL FR0059088 [GTGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGTAAGGGAGGGTTTTCCCTCCGTGAACGGCTTCTTTCCACCATCGATTCCTCCTCCACCACCGCTGGGTTCCTCCTGATGCCAAAGTGAAGCTGGAGGCCACCAAGGGCTTTACAGATCTGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1284#0 CTACCTGGCGGGTCTGTCGGAACTGGGACAGGGTGGATTCGGGGCGCATCAAAGGATCAC 60
consensus_1284#1 ----------------------------GTGGGTGGATTCGGGGCGCATCAAAGGATCAC 32
******************************
consensus_1284#0 CTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCAT 120
consensus_1284#1 CTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCAT 92
************************************************************
consensus_1284#0 GGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACG 180
consensus_1284#1 GGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACG 152
************************************************************
consensus_1284#0 ACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCT 240
consensus_1284#1 ACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCT 212
************************************************************
consensus_1284#0 GGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGGCAGGGTCCACCCCCCCAGGAACAAC 300
consensus_1284#1 GGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGTAAGGGAGGGTTTTCCCTCCGTGAAC 272
********************************** **** *** ***
consensus_1284#0 AGAGGAGCACCTCCACTATGCCAAGAAGCTGTACGACTCAGCCTTCCACCCCGACACGGG 360
consensus_1284#1 ---GGCTTCTTTCCACCATCGATTCCTCCTCCACCACCGCTGGGTTCCTCCTGATGCCAA 329
** ***** ** ** ** ** * * ** ** *
consensus_1284#0 AGACCGCATGAACCTCATCGGCCGCATGTCCTTCCAGGTCCCTGGAGGCATGGCCATCAC 420
consensus_1284#1 AGTGAAGCTGGAGGCCACCA-----AGGGCTTTACAGATCTGGGAA-------------- 370
** ** * ** * * * * ** *** ** * *
consensus_1284#0 CGGCTTCATGCTGCAGTTCTACAGGACAGTTCCTGCTGTGGTGTTCTGGCAGTGGGTGAA 480
consensus_1284#1 ------------------------------------------------------------
consensus_1284#0 TCAGTCCTTCAACGCGCTGGTCAACTACACCAACCGGAACGCCGCTTCCCCAATCACCCC 540
consensus_1284#1 ------------------------------------------------------------
consensus_1284#0 CAAGCAAATAGGAGTGGCCTATATCACAGCCACCAGCACGGCGTTGGCAACAGCGGTGGG 600
consensus_1284#1 ------------------------------------------------------------
consensus_1284#0 ACTCAACCTCTACACAAAGAAAGCTCCT 628
consensus_1284#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |