These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence [CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT] [+] EMBL CA846268 [CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT] consensusID : consensus_1298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAG] [+] EMBL BU806730 [TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1298#0 --------------------CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG 40 consensus_1298#1 TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG 60 ** * ********************************** consensus_1298#0 TCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA 100 consensus_1298#1 TCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA 120 ***** ****************************************************** consensus_1298#0 GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT 160 consensus_1298#1 GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT 180 ************************************************************ consensus_1298#0 TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA 220 consensus_1298#1 TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA 240 ************************************************************ consensus_1298#0 GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA 280 consensus_1298#1 GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA 300 ************************************************************ consensus_1298#0 ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT 340 consensus_1298#1 ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT 360 ************************************************************ consensus_1298#0 TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC 400 consensus_1298#1 TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC 420 ************************************************************ consensus_1298#0 GATGACACGACAGCTGAGG---------------------------AAAATGGTTGCGTG 433 consensus_1298#1 GATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTG 480 ******************* ************** consensus_1298#0 TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT 493 consensus_1298#1 TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT 540 ************************************************************ consensus_1298#0 GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT 553 consensus_1298#1 GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT 600 ************************************************************ consensus_1298#0 CACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCC 613 consensus_1298#1 CACATCCAACAAGCCACCATCCATTGTTTGCAG--------------------------- 633 ********************************* consensus_1298#0 ACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAA 673 consensus_1298#1 ------------------------------------------------------------ consensus_1298#0 CGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT 714 consensus_1298#1 ----------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |