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Takifugu rubripes
cluster # 1298 cluster # 1298       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1298#0 length = 714 sequences # 1  
consensus_1298#1 length = 633 sequences # 1  

consensusID : consensus_1298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence
                              [CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT]

[+] EMBL CA846268             [CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT]


>consensus_1298#0 CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATA TATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTC TGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGT TGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGAT GCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGA AATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGG GATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGA AAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACC CCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGG TCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGA CCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCT GAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT



consensusID : consensus_1298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAG]

[+] EMBL BU806730             [TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAG]


>consensus_1298#1 TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG TCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC GATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTG TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT CACATCCAACAAGCCACCATCCATTGTTTGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1298#0      --------------------CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG 40
consensus_1298#1      TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG 60
                                          **  * **********************************

consensus_1298#0      TCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA 100
consensus_1298#1      TCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA 120
                      ***** ******************************************************

consensus_1298#0      GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT 160
consensus_1298#1      GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT 180
                      ************************************************************

consensus_1298#0      TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA 220
consensus_1298#1      TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA 240
                      ************************************************************

consensus_1298#0      GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA 280
consensus_1298#1      GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA 300
                      ************************************************************

consensus_1298#0      ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT 340
consensus_1298#1      ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT 360
                      ************************************************************

consensus_1298#0      TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC 400
consensus_1298#1      TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC 420
                      ************************************************************

consensus_1298#0      GATGACACGACAGCTGAGG---------------------------AAAATGGTTGCGTG 433
consensus_1298#1      GATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTG 480
                      *******************                           **************

consensus_1298#0      TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT 493
consensus_1298#1      TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT 540
                      ************************************************************

consensus_1298#0      GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT 553
consensus_1298#1      GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT 600
                      ************************************************************

consensus_1298#0      CACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCC 613
consensus_1298#1      CACATCCAACAAGCCACCATCCATTGTTTGCAG--------------------------- 633
                      *********************************                           

consensus_1298#0      ACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAA 673
consensus_1298#1      ------------------------------------------------------------
                                                                                  

consensus_1298#0      CGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT 714
consensus_1298#1      -----------------------------------------
                                                               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)