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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 962 fasta sequence
[GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTGTGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAACCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACCACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTCATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTTTCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAGCTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCCTTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTCCACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGACTCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTTAC]
[+] EMBL AF269222 [GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTGTGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAACCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACCACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTCATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTTTCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAGCTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCCTTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTCCACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGACTCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTTAC]
consensusID : consensus_13#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTGCTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAGGCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT]
[+] EMBL CA846736 [ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTGCTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAGGCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13#0 GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTG 60
consensus_13#1 ------------------------------------------------------------
consensus_13#0 TGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAA 120
consensus_13#1 ------------------------------------------------------------
consensus_13#0 CCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACC 180
consensus_13#1 ------------------------------------------------------------
consensus_13#0 ACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTC 240
consensus_13#1 ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAA--------ACAACCCATTTC 52
********* ** ************************ * * **** ***
consensus_13#0 ATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTT 300
consensus_13#1 ---TTAAATTGCTTCTTCGG-GCCAAGCAGAAAGCTTCAGA----TCCACAGAGAATTTC 104
* * * *** ** * *** **** * *** * * **** **
consensus_13#0 TCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTG 360
consensus_13#1 TGCTTT--------CATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTG 156
* ** * ** * ** **** ****************************
consensus_13#0 TCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAG 420
consensus_13#1 TCAGACTCTGCAGTGTACTACTGTGCTCTGAG-------GCCCACAGTGACAGGAAGCAG 209
******************************** **** ** * ** **
consensus_13#0 CTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCC 480
consensus_13#1 CAGAAGTGCGCACTAAAACC--------TCCACAGTAAGGCCACACTGTATCAGCGGCCG 261
* * * * * * * * * **** * * * *** ** * * *
consensus_13#0 TTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTC 540
consensus_13#1 CT--AGAGGGCGACACACAG---CGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTT 316
* * * * ** *** * * * * **** ** ** * * ** **
consensus_13#0 CACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGAT----CTCTCA 596
consensus_13#1 CTTCATCTTGAGAACTG-ATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCA 375
* ** *** ***** * * * *** **** *** * **
consensus_13#0 GGACTCGCTCTTTAACCAGGT-GGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCT 655
consensus_13#1 AGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT------------------ 417
*** * *** * ** * ** * * * *
consensus_13#0 GTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGC 715
consensus_13#1 ------------------------------------------------------------
consensus_13#0 TGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGA 775
consensus_13#1 ------------------------------------------------------------
consensus_13#0 TCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCA 835
consensus_13#1 ------------------------------------------------------------
consensus_13#0 GAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAA 895
consensus_13#1 ------------------------------------------------------------
consensus_13#0 TATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAAC 955
consensus_13#1 ------------------------------------------------------------
consensus_13#0 CAGTTAC 962
consensus_13#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |