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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1327 cluster # 1327       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1327#0 length = 331 sequences # 1  
 consensus_1327#1 length = 113 sequences # 1  
consensusID : consensus_1327#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence 
                              [ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAGCCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCATGTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTTCCATGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAGGGAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCTGCAGTTCCACCCAAGGGGTATTTCCTGACCAA]

[+] EMBL BU807108             [ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAGCCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCATGTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTTCCATGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAGGGAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCTGCAGTTCCACCCAAGGGGTATTTCCTGACCAA]




>consensus_1327#0
ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAG
CCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCAT
GTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTTCCA
TGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAGG
GAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCTG
CAGTTCCACCCAAGGGGTATTTCCTGACCAA

consensusID : consensus_1327#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 113
fasta sequence 
                              [AGAATTTGCCGCCTCATGTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAGACCCCCCAGAGGGTATTAAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG]

[+] EMBL BU807244             [AGAATTTGCCGCCTCATGTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAGACCCCCCAGAGGGTATTAAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG]




>consensus_1327#1
AGAATTTGCCGCCTCATGTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAG
ACCCCCCAGAGGGTATTAAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1327#0      ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAG 60
consensus_1327#1      ------------------------------------------------------------
                                                                                  

consensus_1327#0      CCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCAT 120
consensus_1327#1      -------------------------------------------AGAATTTGCCGCCTCAT 17
                                                                 *****************

consensus_1327#0      GTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTT-CC 179
consensus_1327#1      GTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAGACCCCCCAGAGGGTATT 77
                      ** ********** * ************* ***********************   *   

consensus_1327#0      ATGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAG 239
consensus_1327#1      AAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG------------------------ 113
                      * *** ******************************                        

consensus_1327#0      GGAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCT 299
consensus_1327#1      ------------------------------------------------------------
                                                                                  

consensus_1327#0      GCAGTTCCACCCAAGGGGTATTTCCTGACCAA 331
consensus_1327#1      --------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)