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Takifugu rubripes
cluster # 1349 cluster # 1349       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1349#0 length = 605 sequences # 1  
 consensus_1349#1 length = 234 sequences # 1  
consensusID : consensus_1349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence 
                              [GGACTTGTTGCTTCAGTAGAACTGAGAGATGACCGGATCGCCTCGGAGACCGCTTCAAGGGCCGGAATAAGAGAACATTGTTGGATTCTGTGGGCTCATGATTCATTTGGGGATTTTAGAAATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGTTTCAGGACTGATTGTACCGTCACCTGAGAATCTGACGTTGGATATTTGGGATGGGGAGGCGACAGCCTTCTGGATCAGTCCCAAAAACGCTCCCTTAGACTTCCGCTACAATGTCGAAATGGCAATTTACTCTAAGCCGTGGGAAAAGGTGGTCAATTGCACGGGGATCACGCACACCTACTGTGACCTTAGCGGCCTCATACACGACTACACCAGGGTCTATAAGGTCCAAGTTCAGCTGGTGGCGGGGCAAAGCTCATCAATATGGATAAAGAAAAAAATTCTACTAAACACAAGCAACCTGCGGCCCCCCACCTTCACTGTATACCCTACATCCAGCTCTCTAACAGTTCATGTCCACAAAAAAAACATTTTAAGCATACTCTTTCCTTACGGGGTCATCTACACCATTAATCTGGAGCAGA]

[+] EMBL BU807279             [GGACTTGTTGCTTCAGTAGAACTGAGAGATGACCGGATCGCCTCGGAGACCGCTTCAAGGGCCGGAATAAGAGAACATTGTTGGATTCTGTGGGCTCATGATTCATTTGGGGATTTTAGAAATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGTTTCAGGACTGATTGTACCGTCACCTGAGAATCTGACGTTGGATATTTGGGATGGGGAGGCGACAGCCTTCTGGATCAGTCCCAAAAACGCTCCCTTAGACTTCCGCTACAATGTCGAAATGGCAATTTACTCTAAGCCGTGGGAAAAGGTGGTCAATTGCACGGGGATCACGCACACCTACTGTGACCTTAGCGGCCTCATACACGACTACACCAGGGTCTATAAGGTCCAAGTTCAGCTGGTGGCGGGGCAAAGCTCATCAATATGGATAAAGAAAAAAATTCTACTAAACACAAGCAACCTGCGGCCCCCCACCTTCACTGTATACCCTACATCCAGCTCTCTAACAGTTCATGTCCACAAAAAAAACATTTTAAGCATACTCTTTCCTTACGGGGTCATCTACACCATTAATCTGGAGCAGA]




>consensus_1349#0
GGACTTGTTGCTTCAGTAGAACTGAGAGATGACCGGATCGCCTCGGAGACCGCTTCAAGG
GCCGGAATAAGAGAACATTGTTGGATTCTGTGGGCTCATGATTCATTTGGGGATTTTAGA
AATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGT
TTCAGGACTGATTGTACCGTCACCTGAGAATCTGACGTTGGATATTTGGGATGGGGAGGC
GACAGCCTTCTGGATCAGTCCCAAAAACGCTCCCTTAGACTTCCGCTACAATGTCGAAAT
GGCAATTTACTCTAAGCCGTGGGAAAAGGTGGTCAATTGCACGGGGATCACGCACACCTA
CTGTGACCTTAGCGGCCTCATACACGACTACACCAGGGTCTATAAGGTCCAAGTTCAGCT
GGTGGCGGGGCAAAGCTCATCAATATGGATAAAGAAAAAAATTCTACTAAACACAAGCAA
CCTGCGGCCCCCCACCTTCACTGTATACCCTACATCCAGCTCTCTAACAGTTCATGTCCA
CAAAAAAAACATTTTAAGCATACTCTTTCCTTACGGGGTCATCTACACCATTAATCTGGA
GCAGA

consensusID : consensus_1349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence 
                              [CGGATCGCCTCGGAGACCGCTTCAAGGGCCGGAATAAGAGAACATTGTTGGATTCTGTGGACTCATGATTCATTTGGGGATTTTAGAAATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGTTTCAGTTACTCTAAGCCGTGNGAAAAGGTGGTCAATTGCACGGGGATCACGCACACCTACTGTGACCTTAGCGGCCTCATACACGAC]

[+] EMBL FR0059850            [CGGATCGCCTCGGAGACCGCTTCAAGGGCCGGAATAAGAGAACATTGTTGGATTCTGTGGACTCATGATTCATTTGGGGATTTTAGAAATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGTTTCAGTTACTCTAAGCCGTGNGAAAAGGTGGTCAATTGCACGGGGATCACGCACACCTACTGTGACCTTAGCGGCCTCATACACGAC]




>consensus_1349#1
CGGATCGCCTCGGAGACCGCTTCAAGGGCCGGAATAAGAGAACATTGTTGGATTCTGTGG
ACTCATGATTCATTTGGGGATTTTAGAAATGAATGCAAGAATCACGGCACCGTTTTTTGT
CTTCCTGACCATTTGTGTGAGCCGTGTTTCAGTTACTCTAAGCCGTGNGAAAAGGTGGTC
AATTGCACGGGGATCACGCACACCTACTGTGACCTTAGCGGCCTCATACACGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1349#0      GGACTTGTTGCTTCAGTAGAACTGAGAGATGACCGGATCGCCTCGGAGACCGCTTCAAGG 60
consensus_1349#1      ---------------------------------CGGATCGCCTCGGAGACCGCTTCAAGG 27
                                                       ***************************

consensus_1349#0      GCCGGAATAAGAGAACATTGTTGGATTCTGTGGGCTCATGATTCATTTGGGGATTTTAGA 120
consensus_1349#1      GCCGGAATAAGAGAACATTGTTGGATTCTGTGGACTCATGATTCATTTGGGGATTTTAGA 87
                      ********************************* **************************

consensus_1349#0      AATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGT 180
consensus_1349#1      AATGAATGCAAGAATCACGGCACCGTTTTTTGTCTTCCTGACCATTTGTGTGAGCCGTGT 147
                      ************************************************************

consensus_1349#0      TTCAGGACTGATTGTACCGTCACCTGAGAATCTGACGTTGGATATTTGGGATGGGGAGGC 240
consensus_1349#1      TTCAG------TTACTCTAAGCCGTGNGAA----AAGGTGGTCAATTGCACGGGGATCAC 197
                      *****      **   *     * ** ***    * * ***  * ***    ***    *

consensus_1349#0      GACAGCCTTCTGGATCAGTCCCAAAAACGCTCCCTTAGACTTCCGCTACAATGTCGAAAT 300
consensus_1349#1      GCACACCTACTGTGACCTT------AGCGGCCTCATACACGAC----------------- 234
                      *    *** ***   *  *      * **  * * ** **  *                 

consensus_1349#0      GGCAATTTACTCTAAGCCGTGGGAAAAGGTGGTCAATTGCACGGGGATCACGCACACCTA 360
consensus_1349#1      ------------------------------------------------------------
                                                                                  

consensus_1349#0      CTGTGACCTTAGCGGCCTCATACACGACTACACCAGGGTCTATAAGGTCCAAGTTCAGCT 420
consensus_1349#1      ------------------------------------------------------------
                                                                                  

consensus_1349#0      GGTGGCGGGGCAAAGCTCATCAATATGGATAAAGAAAAAAATTCTACTAAACACAAGCAA 480
consensus_1349#1      ------------------------------------------------------------
                                                                                  

consensus_1349#0      CCTGCGGCCCCCCACCTTCACTGTATACCCTACATCCAGCTCTCTAACAGTTCATGTCCA 540
consensus_1349#1      ------------------------------------------------------------
                                                                                  

consensus_1349#0      CAAAAAAAACATTTTAAGCATACTCTTTCCTTACGGGGTCATCTACACCATTAATCTGGA 600
consensus_1349#1      ------------------------------------------------------------
                                                                                  

consensus_1349#0      GCAGA 605
consensus_1349#1      -----


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)