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Takifugu rubripes
cluster # 1351 cluster # 1351       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1351#0 length = 597 sequences # 1  
 consensus_1351#1 length = 494 sequences # 1  
consensusID : consensus_1351#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence 
                              [TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCATGAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTATGGACGTTTACGGTAATTAGGTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGGCCATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACATAAATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT]

[+] EMBL CA590968             [TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCATGAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTATGGACGTTTACGGTAATTAGGTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGGCCATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACATAAATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT]




>consensus_1351#0
TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCAT
GAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCT
AACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGG
TGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACG
TTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGA
TGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGG
TGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTAT
GGACGTTTACGGTAATTAGGTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGGC
CATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACATA
AATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT

consensusID : consensus_1351#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence 
                              [CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCCTAGCCCAAGAAACAAACGACGCAGCAGGTCCCGCAGCAGGAGCCGTTCTCGTTCCCGAAGCAGGTCCCGCTACAGTAAATCCAGATCCAGATCTCGATCCCGATCCTACTCACCAGCTCGCCGCAGCAAAATCAGGTCCCGGTCCTAC]

[+] EMBL BU807313             [CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCCCGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTGGGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCCTAGCCCAAGAAACAAACGACGCAGCAGGTCCCGCAGCAGGAGCCGTTCTCGTTCCCGAAGCAGGTCCCGCTACAGTAAATCCAGATCCAGATCTCGATCCCGATCCTACTCACCAGCTCGCCGCAGCAAAATCAGGTCCCGGTCCTAC]




>consensus_1351#1
CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCTAACTTACCGAACAG
CCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGGTGATGTTTACATCC
CGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACGTTTCTTCGACAAAC
GGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGATGGCCGGGAGTTGC
GGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGGTGGGGGGCGACGTG
GGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCCTAGCCCAAGAAACA
AACGACGCAGCAGGTCCCGCAGCAGGAGCCGTTCTCGTTCCCGAAGCAGGTCCCGCTACA
GTAAATCCAGATCCAGATCTCGATCCCGATCCTACTCACCAGCTCGCCGCAGCAAAATCA
GGTCCCGGTCCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1351#0      TATTACGTACCGTCAGTTTAAAGGTGCTGATTTGCGGGCCTAACGATTAATCGCCGCCAT 60
consensus_1351#1      ------------------------------------------------------------
                                                                                  

consensus_1351#0      GAATTACGGTAGGCCTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCT 120
consensus_1351#1      --------------CTCCGCCAGATGTTGAAGGTATGGTTTCTCTTAAAGTGGACAACCT 46
                                    **********************************************

consensus_1351#0      AACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGG 180
consensus_1351#1      AACTTACCGAACAGCCCCCGAAACCCTCAGGCGCGTATTCGAGAAATATGGCCGAGTCGG 106
                      ************************************************************

consensus_1351#0      TGATGTTTACATCCCGCGGGATCGCTACACCAAAGAAAGTCGAGGTTTCGCATTTGTACG 240
consensus_1351#1      TGATGTTTACATCCCGCGGGATCTTTTCTCCAAAGAAAGTCGAGGTTTCGCATTTGTACG 166
                      ***********************  * * *******************************

consensus_1351#0      TTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGA 300
consensus_1351#1      TTTCTTCGACAAACGGGACGCCGAGGATGCGATGGACGCCATGGACGGCGCGCTCCTGGA 226
                      ************************************************************

consensus_1351#0      TGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGG 360
consensus_1351#1      TGGCCGGGAGTTGCGGGTTCAGATGGCTCGATATGGCAGACCGCCCGATTCTCACTACGG 286
                      ************************************************************

consensus_1351#0      TGGGGGGCGACGTGGGCCGCCAAAGAAGCATAGCGGACGGCGGAGCAGAGGGTATAGTAT 420
consensus_1351#1      TGGGGGGCGACGTGGGCCGCCAAAGAATCATAGCGGACGGCGGAGCAGAAGCCATTCTCC 346
                      *************************** ********************* *  **  *  

consensus_1351#0      GGACGTTTACGGTAATTAG-GTGGATATTTTAGTAATGAAAGAATTCTTTCATCCCTTGG 479
consensus_1351#1      TAGCCCAAGAAACAAACGACGCAGCAGGTCCCGCAGCAGGAGCCGT-TCTCGTTCCCGAA 405
                         *         **     *  *    *   * *     **   * * ** * **    

consensus_1351#0      CCATACGTTAGCTGCACGAGGTGTTGCCTGCAATTAGCTAGTGGCAAACCTGTTAAACAT 539
consensus_1351#1      GCAGGTCCC-GCTACAGTAAATCCAGATCCAGATC--TCGATCCCGATCCTACTCACCA- 461
                       **       *** **  *  *   *      **       *  * * ***  * * ** 

consensus_1351#0      AAATGGCAGGACCTTTGGAAGCACTTCCACCGTTTTATTTTTATTACCTAAGACCATT 597
consensus_1351#1      -GCTCGCCGCAGC---AAAATCAGGTCC-CGGTCCTAC-------------------- 494
                         * ** * * *     ** **  *** * **  **


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)