These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTGTAGAAGTACCTGCTAACGTGACCCCCCACCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAACATGAAGCACATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGA] [+] EMBL FR0055286 [AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTGTAGAAGTACCTGCTAACGTGACCCCCCACCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAACATGAAGCACATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGA] consensusID : consensus_1355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [TGTAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACAACATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT] [+] EMBL CA846584 [TGTAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACAACATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1355#0 AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTG 60 consensus_1355#1 ----------------------------------------------------------TG 2 ** consensus_1355#0 TAGAAGTACCTGCTAACGTGACCCCCCACCCCCC-AGCATTAAGCCCACCGCATACACGA 119 consensus_1355#1 TAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACACGA 62 *************************** ****** ************************* consensus_1355#0 CGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTAC 179 consensus_1355#1 CGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTAC 122 ************************************************************ consensus_1355#0 GACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGC-----------TCAT 228 consensus_1355#1 GACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTCAT 182 **************** **************************** **** consensus_1355#0 CTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCA 288 consensus_1355#1 CTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCA 242 ************************************************************ consensus_1355#0 GGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAAC 348 consensus_1355#1 GGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACAAC 302 ************************************************** ******** consensus_1355#0 ATGAAGCACATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTG 408 consensus_1355#1 ATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTGTG 362 ******** *********************************** *************** consensus_1355#0 TTTTATTGGGAGTCACCTAAGTGACACATGA-------------- 439 consensus_1355#1 TTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT 407 ******************************* |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |