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Takifugu rubripes
cluster # 1355 cluster # 1355       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1355#0 length = 439 sequences # 1  
 consensus_1355#1 length = 407 sequences # 1  
consensusID : consensus_1355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence 
                              [AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTGTAGAAGTACCTGCTAACGTGACCCCCCACCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAACATGAAGCACATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGA]

[+] EMBL FR0055286            [AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTGTAGAAGTACCTGCTAACGTGACCCCCCACCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAACATGAAGCACATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGA]




>consensus_1355#0
AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTG
TAGAAGTACCTGCTAACGTGACCCCCCACCCCCCAGCATTAAGCCCACCGCATACACGAC
GTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACG
ACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCG
GGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGC
GACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAACATGAAGCACATG
AATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTGTTTTATTGGGAG
TCACCTAAGTGACACATGA

consensusID : consensus_1355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence 
                              [TGTAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACAACATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT]

[+] EMBL CA846584             [TGTAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACACGACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTACGACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTCATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACAACATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTGTGTTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT]




>consensus_1355#1
TGTAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACAC
GACGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGT
ACGACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTC
ATCTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCAT
CAGGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACA
ACATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTG
TGTTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1355#0      AGAGGAAAGAGAGAAACATTGAGATTTGACCTGATAGCACGCGTGGGTTTCATTTACCTG 60
consensus_1355#1      ----------------------------------------------------------TG 2
                                                                                **

consensus_1355#0      TAGAAGTACCTGCTAACGTGACCCCCCACCCCCC-AGCATTAAGCCCACCGCATACACGA 119
consensus_1355#1      TAGAAGTACCTGCTAACGTGACCCCCCCCCCCCCCAGCATTAAGCCCACCGCATACACGA 62
                      *************************** ****** *************************

consensus_1355#0      CGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTAC 179
consensus_1355#1      CGTACTTAACCCACATATCTTGTTAAATCTGCGGCACGTACGACATCTTTGTGCACGTAC 122
                      ************************************************************

consensus_1355#0      GACCATCCTGCGATGGCCGGGGAGAACACGGCGCCAACACGGCGC-----------TCAT 228
consensus_1355#1      GACCATCCTGCGATGGTCGGGGAGAACACGGCGCCAACACGGCGCCAACACGGCGCTCAT 182
                      **************** ****************************           ****

consensus_1355#0      CTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCA 288
consensus_1355#1      CTGGCACCCGCGGGTCTGTTCGCTCCTCCCGCTGACGTGTTGCTTTCTGGGTTCCCATCA 242
                      ************************************************************

consensus_1355#0      GGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATATTACCACAAC 348
consensus_1355#1      GGTTGCCCTGGCGACCCACGCTAACCGGGAGTCACTGCTTTGCCAAAATAAAACCACAAC 302
                      **************************************************  ********

consensus_1355#0      ATGAAGCACATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGCAAAGGAAGAAGTGTG 408
consensus_1355#1      ATGAAGCAAATGAATGTCTGTTTTTGTGGGTGGATTAAAGAAGGAAAAGGAAGAAGTGTG 362
                      ******** *********************************** ***************

consensus_1355#0      TTTTATTGGGAGTCACCTAAGTGACACATGA-------------- 439
consensus_1355#1      TTTTATTGGGAGTCACCTAAGTGACACATGATGGACTCACATTTT 407
                      *******************************


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)