These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [GTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGTTATTGATTTGTAGGTGACGTGCCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATTATGGGCCGGCGTTCCACCAAGCTTATTTTCCAGAACTTAGCAGGACAGTATCTATCAGTGCATCGCTGCATCCTGCAGGGCAAGTCTGCTGA] [+] EMBL BU807484 [GTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGTTATTGATTTGTAGGTGACGTGCCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATTATGGGCCGGCGTTCCACCAAGCTTATTTTCCAGAACTTAGCAGGACAGTATCTATCAGTGCATCGCTGCATCCTGCAGGGCAAGTCTGCTGA] consensusID : consensus_1369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [CTTTCAATAGCCTCTAGTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGGTGACGTGTCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATT] [+] EMBL CA589746 [CTTTCAATAGCCTCTAGTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGGTGACGTGTCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1369#0 ----------------GTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAA 44 consensus_1369#1 CTTTCAATAGCCTCTAGTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAA 60 ******************************************** consensus_1369#0 GAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGT 104 consensus_1369#1 GAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGT 120 ************************************************************ consensus_1369#0 GTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCT 164 consensus_1369#1 GTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCT 180 ************************************************************ consensus_1369#0 GCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAAT 224 consensus_1369#1 GCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAAT 240 ************************************************************ consensus_1369#0 CCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTA 284 consensus_1369#1 CCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTA 300 ************************************************************ consensus_1369#0 CTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAAC 344 consensus_1369#1 CTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAAC 360 ************************************************************ consensus_1369#0 AAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGG 404 consensus_1369#1 AAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGG 420 ************************************************************ consensus_1369#0 TTATTGATTTGTAGGTGACGTGCCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATG 464 consensus_1369#1 --------------GTGACGTGTCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATG 466 ******** ************************************* consensus_1369#0 TGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGAT 524 consensus_1369#1 TGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGAT 526 ************************************************************ consensus_1369#0 TATGGGCCGGCGTTCCACCAAGCTTATTTTCCAGAACTTAGCAGGACAGTATCTATCAGT 584 consensus_1369#1 T----------------------------------------------------------- 527 * consensus_1369#0 GCATCGCTGCATCCTGCAGGGCAAGTCTGCTGA 617 consensus_1369#1 --------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |