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Takifugu rubripes
cluster # 1373 cluster # 1373       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1373#0 length = 625 sequences # 1  
 consensus_1373#1 length = 272 sequences # 1  
consensusID : consensus_1373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence 
                              [GTATAAACGTGAATAAACCCTTTAAACCCCTATTTGATTCTTCTTCATTAAGGTGCATCAGCCGCATCCCTGTCAACTACAACGGTTGTAACTGTGCTTGAAACCCAGGTGAACTGTCCGTAAACATAACCTGTGGGGTGGTACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGCCTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACCATGGTCTTCAGCTGAGATAGCGAGGCAGGCGGGGCAAGGTGCTCGAGCTGTCCCTTTGGCTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGTCAACAAGTCTGTCAACCATGGATTCTGCTTCAACATCCTCTGTGTTGGTGAGACGGGACTGGGGAAGTCCACCCTGATGGACACACTGTTTAACACCAAATTTGAGGGCTTTGGAGACCAGATCAACAAAGATGACAGCTACAAGCCCATTGTGGAGTTTATTGATGCCCAGTTTGAAGCATATCTACAGGAGGAGCTGAAAATCAAGCGCACTCTTCACAACTACCATGACACCCGCATCCACGCGTGTCTGTACTTCATTGCCCCCACAGGACACTCCTTGAAA]

[+] EMBL BU807497             [GTATAAACGTGAATAAACCCTTTAAACCCCTATTTGATTCTTCTTCATTAAGGTGCATCAGCCGCATCCCTGTCAACTACAACGGTTGTAACTGTGCTTGAAACCCAGGTGAACTGTCCGTAAACATAACCTGTGGGGTGGTACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGCCTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACCATGGTCTTCAGCTGAGATAGCGAGGCAGGCGGGGCAAGGTGCTCGAGCTGTCCCTTTGGCTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGTCAACAAGTCTGTCAACCATGGATTCTGCTTCAACATCCTCTGTGTTGGTGAGACGGGACTGGGGAAGTCCACCCTGATGGACACACTGTTTAACACCAAATTTGAGGGCTTTGGAGACCAGATCAACAAAGATGACAGCTACAAGCCCATTGTGGAGTTTATTGATGCCCAGTTTGAAGCATATCTACAGGAGGAGCTGAAAATCAAGCGCACTCTTCACAACTACCATGACACCCGCATCCACGCGTGTCTGTACTTCATTGCCCCCACAGGACACTCCTTGAAA]




>consensus_1373#0
GTATAAACGTGAATAAACCCTTTAAACCCCTATTTGATTCTTCTTCATTAAGGTGCATCA
GCCGCATCCCTGTCAACTACAACGGTTGTAACTGTGCTTGAAACCCAGGTGAACTGTCCG
TAAACATAACCTGTGGGGTGGTACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGC
CTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACC
ATGGTCTTCAGCTGAGATAGCGAGGCAGGCGGGGCAAGGTGCTCGAGCTGTCCCTTTGGC
TGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGTCAACAAGTCTGTCAACCATGG
ATTCTGCTTCAACATCCTCTGTGTTGGTGAGACGGGACTGGGGAAGTCCACCCTGATGGA
CACACTGTTTAACACCAAATTTGAGGGCTTTGGAGACCAGATCAACAAAGATGACAGCTA
CAAGCCCATTGTGGAGTTTATTGATGCCCAGTTTGAAGCATATCTACAGGAGGAGCTGAA
AATCAAGCGCACTCTTCACAACTACCATGACACCCGCATCCACGCGTGTCTGTACTTCAT
TGCCCCCACAGGACACTCCTTGAAA

consensusID : consensus_1373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence 
                              [TGCTTGAAACCCAGATAACCTGTGGGGTGTGACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGCCTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACCATGGCGTCAGGTGAGATAGCGAGGCAGGCGGGGCAAGGGTGCTCGAGCTGTCCCTTTGGCTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGGCAACAAGTCTGGCAACCATGGGATCCTGCTTCAACATCCTCTGG]

[+] EMBL FR0060965            [TGCTTGAAACCCAGATAACCTGTGGGGTGTGACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGCCTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACCATGGCGTCAGGTGAGATAGCGAGGCAGGCGGGGCAAGGGTGCTCGAGCTGTCCCTTTGGCTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGGCAACAAGTCTGGCAACCATGGGATCCTGCTTCAACATCCTCTGG]




>consensus_1373#1
TGCTTGAAACCCAGATAACCTGTGGGGTGTGACAGTCCTACTAGGCCAGCTTTGACCGTA
TCTCGCTGCCTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCA
CCTATTACCATGGCGTCAGGTGAGATAGCGAGGCAGGCGGGGCAAGGGTGCTCGAGCTGT
CCCTTTGGCTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGGCAACAAGTCTGG
CAACCATGGGATCCTGCTTCAACATCCTCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1373#0      GTATAAACGTGAATAAACCCTTTAAACCCCTATTTGATTCTTCTTCATTAAGGTGCATCA 60
consensus_1373#1      ------------------------------------------------------------
                                                                                  

consensus_1373#0      GCCGCATCCCTGTCAACTACAACGGTTGTAACTGTGCTTGAAACCCAGGTGAACTGTCCG 120
consensus_1373#1      ----------------------------------TGCTTGAAACCCAG------------ 14
                                                        **************            

consensus_1373#0      TAAACATAACCTGTGGGGTGGTACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGC 180
consensus_1373#1      -----ATAACCTGTGGGGTGTGACAGTCCTACTAGGCCAGCTTTGACCGTATCTCGCTGC 69
                           ***************  **************************************

consensus_1373#0      CTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACC 240
consensus_1373#1      CTCCCATTGCTCGAAACGGAAAGCAGCCGAGGTTTCGCCCTCCAGCGAGCACCTATTACC 129
                      ************************************************************

consensus_1373#0      ATGGTCTTCAGCTGAGATAGCGAGGCAGGCGGGGCAAGG-TGCTCGAGCTGTCCCTTTGG 299
consensus_1373#1      ATGG-CGTCAGGTGAGATAGCGAGGCAGGCGGGGCAAGGGTGCTCGAGCTGTCCCTTTGG 188
                      **** * **** *************************** ********************

consensus_1373#0      CTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGTCAACAAGTCTGTCAACCATG 359
consensus_1373#1      CTGGACATGTTGGGTTTGACAGCATGCCTGACCAGCTGGGCAACAAGTCTGGCAACCATG 248
                      *************************************** *********** ********

consensus_1373#0      G-ATTCTGCTTCAACATCCTCTGTGTTGGTGAGACGGGACTGGGGAAGTCCACCCTGATG 418
consensus_1373#1      GGATCCTGCTTCAACATCCTCTGG------------------------------------ 272
                      * ** ******************                                     

consensus_1373#0      GACACACTGTTTAACACCAAATTTGAGGGCTTTGGAGACCAGATCAACAAAGATGACAGC 478
consensus_1373#1      ------------------------------------------------------------
                                                                                  

consensus_1373#0      TACAAGCCCATTGTGGAGTTTATTGATGCCCAGTTTGAAGCATATCTACAGGAGGAGCTG 538
consensus_1373#1      ------------------------------------------------------------
                                                                                  

consensus_1373#0      AAAATCAAGCGCACTCTTCACAACTACCATGACACCCGCATCCACGCGTGTCTGTACTTC 598
consensus_1373#1      ------------------------------------------------------------
                                                                                  

consensus_1373#0      ATTGCCCCCACAGGACACTCCTTGAAA 625
consensus_1373#1      ---------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)