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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1386 cluster # 1386       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1386#0 length = 351 sequences # 1  
 consensus_1386#1 length = 342 sequences # 1  
consensusID : consensus_1386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence 
                              [CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGCAGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGCCTTGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACAACTGAAAATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTATGTGGCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG]

[+] EMBL FR0061908            [CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGCAGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGCCTTGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACAACTGAAAATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTATGTGGCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG]




>consensus_1386#0
CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGC
AGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAG
TCATAGATGATCAGGCCTATCCTGAAGCCTTGCAAAAACAAGAAAGAAGCCAAAAAGAAA
GCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACAACTGAA
AATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTATGTG
GCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG

consensusID : consensus_1386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence 
                              [AAACCGGCTCAGTTTACAGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAACGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACACAGACTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTTTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTGGAGTCAACAAGACCGGGGCTTCGCGGAGC]

[+] EMBL FR0059002            [AAACCGGCTCAGTTTACAGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAACGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACACAGACTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTTTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTGGAGTCAACAAGACCGGGGCTTCGCGGAGC]




>consensus_1386#1
AAACCGGCTCAGTTTACAGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAAC
GTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAA
GAAAGAAGCCAAAAAGAAAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCG
CGACTCTGAAACACAGACTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCC
GATCACTCGGACTAACTTTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAG
CGTAAAATTAGTGGAGTCAACAAGACCGGGGCTTCGCGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1386#0      CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGC 60
consensus_1386#1      -------------------------------------------AAACCGGCTCAGTTTAC 17
                                                                 **  * *  **   * *

consensus_1386#0      AGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAG 120
consensus_1386#1      AGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAACGTTTAGAGTAAGAGCAG 77
                      **  *  ******** ************ ******   ***  *****************

consensus_1386#0      TCATAGATGATCAGGCCTATCCTGAAGCCTT--GCAAAAACAAGAAAGAAGCCAAAAAGA 178
consensus_1386#1      TCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAAGAAAGAAGCCAAAAAGA 137
                      *************************** * *  ***************************

consensus_1386#0      AAGCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACA---A 235
consensus_1386#1      AAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACACAGA 197
                      ************  ******************************************   *

consensus_1386#0      CTGAAAATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACT 295
consensus_1386#1      CTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACT 257
                      ***************** ** ***************************************

consensus_1386#0      ATGTGGCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG---- 351
consensus_1386#1      TTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTGGAGT 317
                       ******************* ***********************************    

consensus_1386#0      -------------------------
consensus_1386#1      CAACAAGACCGGGGCTTCGCGGAGC 342


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)