These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GCTGGTTTGCTTTCAGATCCGACTTTCAGTCATTTCTCTTCTTCCTTCTGCCTCTGGATGAAGCCCGATCGGGCAGATGTCGTGGTGATTAAAGATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCTACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGAGCCGAACCTCCCGCGGACACACACGTTTCAGTATGTTGAAGACGACCTGTTCTTTGCTTTGGCTGCTGCTTCAGAACTGCATACTGGATGTGTCTCAGATACATGCCCTGCGTGCAGGCTCAGTACGGGCCAGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTCAGTTACCAGGGCGACAGTTACACCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGAGGAGGTGAGATCTCCGCTGCAGCAGCGACGACCTCCCTCCCCAGCTTCAATGTCTTTGTAGAGGGGAGCTATGAGCCAAAGTCCTCCTGCCTCTACCAGATGCCTCCACAT] [+] EMBL BU807699 [GCTGGTTTGCTTTCAGATCCGACTTTCAGTCATTTCTCTTCTTCCTTCTGCCTCTGGATGAAGCCCGATCGGGCAGATGTCGTGGTGATTAAAGATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCTACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGAGCCGAACCTCCCGCGGACACACACGTTTCAGTATGTTGAAGACGACCTGTTCTTTGCTTTGGCTGCTGCTTCAGAACTGCATACTGGATGTGTCTCAGATACATGCCCTGCGTGCAGGCTCAGTACGGGCCAGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTCAGTTACCAGGGCGACAGTTACACCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGAGGAGGTGAGATCTCCGCTGCAGCAGCGACGACCTCCCTCCCCAGCTTCAATGTCTTTGTAGAGGGGAGCTATGAGCCAAAGTCCTCCTGCCTCTACCAGATGCCTCCACAT] consensusID : consensus_1389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CCTGTCGCGCTACAGAATCGCAAAGTTTGTTCCACCTTTTTCTCTTGATTTTTTGGAGGCTTCGTGATTATTCTGGATGGAAATAGGATACGTTATGCGAGGTTATTGCCACATGTAAAGACGGAACCGCTACAGCAATCAAATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCAACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGATCTATGGCATTCTGACAATGAACAAGCGCACTCAGTTATTGGAACAGCTGCAGTTTGGCCAGTTGAAATGC] [+] EMBL FR0058632 [CCTGTCGCGCTACAGAATCGCAAAGTTTGTTCCACCTTTTTCTCTTGATTTTTTGGAGGCTTCGTGATTATTCTGGATGGAAATAGGATACGTTATGCGAGGTTATTGCCACATGTAAAGACGGAACCGCTACAGCAATCAAATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCAACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGATCTATGGCATTCTGACAATGAACAAGCGCACTCAGTTATTGGAACAGCTGCAGTTTGGCCAGTTGAAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1389#0 -------------------GCTGGTTTGCTTTCAGATCCGACTTTCAGTCATTTCTCTTC 41 consensus_1389#1 CCTGTCGCGCTACAGAATCGCAAAGTTTGTTCCACCTTTTTCTCTTGATTTTTTGGAGGC 60 ** ** ** ** * ** * * *** * consensus_1389#0 TTCCTTCTGCCTCTGGATG-AAGCCCGAT------CGGGCAGATGTCGTGGTGATTAAAG 94 consensus_1389#1 TTCGTGATTATTCTGGATGGAAATAGGATACGTTATGCGAGGTTATTGCCACATGTAAAG 120 *** * * ******** ** *** * * * * * * ***** consensus_1389#0 A----------------------TACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAA 132 consensus_1389#1 ACGGAACCGCTACAGCAATCAAATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAA 180 * ************************************* consensus_1389#0 TCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGC 192 consensus_1389#1 TCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGC 240 ************************************************************ consensus_1389#0 CGCAGCCACGCCACCTCTCTACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCA 252 consensus_1389#1 CGCAGCCACGCCACCTCTCAACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCA 300 ******************* **************************************** consensus_1389#0 CCAGAGCCG-AACCTCCCGCGGACACACACGTTTCAGTATGTTGAAGACGACCTGTTCTT 311 consensus_1389#1 CCAGATCTATGGCATTCTGACAATGAACAAGCG-CACTCAGTTATTG--GAACAG--CTG 355 ***** * * * * * * *** * ** * *** * ** * * ** consensus_1389#0 TGCTTTGGCTGCTGCTTCAGAACTGCATACTGGATGTGTCTCAGATACATGCCCTGCGTG 371 consensus_1389#1 CAGTTTGGCCAGTT-----GAAATGC---------------------------------- 376 ****** * *** *** consensus_1389#0 CAGGCTCAGTACGGGCCAGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTCAGTTAC 431 consensus_1389#1 ------------------------------------------------------------ consensus_1389#0 CAGGGCGACAGTTACACCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGA 491 consensus_1389#1 ------------------------------------------------------------ consensus_1389#0 GGAGGTGAGATCTCCGCTGCAGCAGCGACGACCTCCCTCCCCAGCTTCAATGTCTTTGTA 551 consensus_1389#1 ------------------------------------------------------------ consensus_1389#0 GAGGGGAGCTATGAGCCAAAGTCCTCCTGCCTCTACCAGATGCCTCCACAT 602 consensus_1389#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |