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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[GCTGGTTTGCTTTCAGATCCGACTTTCAGTCATTTCTCTTCTTCCTTCTGCCTCTGGATGAAGCCCGATCGGGCAGATGTCGTGGTGATTAAAGATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCTACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGAGCCGAACCTCCCGCGGACACACACGTTTCAGTATGTTGAAGACGACCTGTTCTTTGCTTTGGCTGCTGCTTCAGAACTGCATACTGGATGTGTCTCAGATACATGCCCTGCGTGCAGGCTCAGTACGGGCCAGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTCAGTTACCAGGGCGACAGTTACACCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGAGGAGGTGAGATCTCCGCTGCAGCAGCGACGACCTCCCTCCCCAGCTTCAATGTCTTTGTAGAGGGGAGCTATGAGCCAAAGTCCTCCTGCCTCTACCAGATGCCTCCACAT]
[+] EMBL BU807699 [GCTGGTTTGCTTTCAGATCCGACTTTCAGTCATTTCTCTTCTTCCTTCTGCCTCTGGATGAAGCCCGATCGGGCAGATGTCGTGGTGATTAAAGATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCTACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGAGCCGAACCTCCCGCGGACACACACGTTTCAGTATGTTGAAGACGACCTGTTCTTTGCTTTGGCTGCTGCTTCAGAACTGCATACTGGATGTGTCTCAGATACATGCCCTGCGTGCAGGCTCAGTACGGGCCAGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTCAGTTACCAGGGCGACAGTTACACCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGAGGAGGTGAGATCTCCGCTGCAGCAGCGACGACCTCCCTCCCCAGCTTCAATGTCTTTGTAGAGGGGAGCTATGAGCCAAAGTCCTCCTGCCTCTACCAGATGCCTCCACAT]
consensusID : consensus_1389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[CCTGTCGCGCTACAGAATCGCAAAGTTTGTTCCACCTTTTTCTCTTGATTTTTTGGAGGCTTCGTGATTATTCTGGATGGAAATAGGATACGTTATGCGAGGTTATTGCCACATGTAAAGACGGAACCGCTACAGCAATCAAATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCAACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGATCTATGGCATTCTGACAATGAACAAGCGCACTCAGTTATTGGAACAGCTGCAGTTTGGCCAGTTGAAATGC]
[+] EMBL FR0058632 [CCTGTCGCGCTACAGAATCGCAAAGTTTGTTCCACCTTTTTCTCTTGATTTTTTGGAGGCTTCGTGATTATTCTGGATGGAAATAGGATACGTTATGCGAGGTTATTGCCACATGTAAAGACGGAACCGCTACAGCAATCAAATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAATCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGCCGCAGCCACGCCACCTCTCAACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCACCAGATCTATGGCATTCTGACAATGAACAAGCGCACTCAGTTATTGGAACAGCTGCAGTTTGGCCAGTTGAAATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1389#0 -------------------GCTGGTTTGCTTTCAGATCCGACTTTCAGTCATTTCTCTTC 41
consensus_1389#1 CCTGTCGCGCTACAGAATCGCAAAGTTTGTTCCACCTTTTTCTCTTGATTTTTTGGAGGC 60
** ** ** ** * ** * * *** *
consensus_1389#0 TTCCTTCTGCCTCTGGATG-AAGCCCGAT------CGGGCAGATGTCGTGGTGATTAAAG 94
consensus_1389#1 TTCGTGATTATTCTGGATGGAAATAGGATACGTTATGCGAGGTTATTGCCACATGTAAAG 120
*** * * ******** ** *** * * * * * * *****
consensus_1389#0 A----------------------TACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAA 132
consensus_1389#1 ACGGAACCGCTACAGCAATCAAATACTGGTTCGGAAGAGCGCGCACAGCCGAGCTCGGAA 180
* *************************************
consensus_1389#0 TCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGC 192
consensus_1389#1 TCGGACACCTCCTCCGCGACGCCCGCCGAGTCTTCTCTGCTCCTGGTGCCCTGTCCCGGC 240
************************************************************
consensus_1389#0 CGCAGCCACGCCACCTCTCTACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCA 252
consensus_1389#1 CGCAGCCACGCCACCTCTCAACCCCGTACATCCAGCACCATTCAGCGCGAAGCCCTTTCA 300
******************* ****************************************
consensus_1389#0 CCAGAGCCG-AACCTCCCGCGGACACACACGTTTCAGTATGTTGAAGACGACCTGTTCTT 311
consensus_1389#1 CCAGATCTATGGCATTCTGACAATGAACAAGCG-CACTCAGTTATTG--GAACAG--CTG 355
***** * * * * * * *** * ** * *** * ** * * **
consensus_1389#0 TGCTTTGGCTGCTGCTTCAGAACTGCATACTGGATGTGTCTCAGATACATGCCCTGCGTG 371
consensus_1389#1 CAGTTTGGCCAGTT-----GAAATGC---------------------------------- 376
****** * *** ***
consensus_1389#0 CAGGCTCAGTACGGGCCAGCCCCTCCAGGCTCAGCCTACTCTGGCCAGTCCTTCAGTTAC 431
consensus_1389#1 ------------------------------------------------------------
consensus_1389#0 CAGGGCGACAGTTACACCTCTGACCTCATGACCCCTGACTACACCAAGCTGGACCTGGGA 491
consensus_1389#1 ------------------------------------------------------------
consensus_1389#0 GGAGGTGAGATCTCCGCTGCAGCAGCGACGACCTCCCTCCCCAGCTTCAATGTCTTTGTA 551
consensus_1389#1 ------------------------------------------------------------
consensus_1389#0 GAGGGGAGCTATGAGCCAAAGTCCTCCTGCCTCTACCAGATGCCTCCACAT 602
consensus_1389#1 ---------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |