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Takifugu rubripes
cluster # 1392 cluster # 1392       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1392#0 length = 518 sequences # 1  
 consensus_1392#1 length = 284 sequences # 1  
consensusID : consensus_1392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence 
                              [TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGCAAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTTACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATGAAGCAGGTGGATATTATAAATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATTACAGAGTCCCCAGCCCAGCCAAAGCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGTTGTCCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCCCATGACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGGAACTGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT]

[+] EMBL BU807706             [TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGCAAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTTACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATGAAGCAGGTGGATATTATAAATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATTACAGAGTCCCCAGCCCAGCCAAAGCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGTTGTCCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCCCATGACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGGAACTGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT]




>consensus_1392#0
TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGC
AAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTT
TCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTT
ACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATG
AAGCAGGTGGATATTATAAATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATTAC
AGAGTCCCCAGCCCAGCCAAAGCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGTTGT
CCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCCCAT
GACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGGAAC
TGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT

consensusID : consensus_1392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence 
                              [GGGCGGCGCCATCACACCCCGGGACCCTCCAGACCGGCGTCGGGCTTTCTTCGCCAAATCAATCCCACAATCCCTCACACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCGTTACTGAGCCTCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGGGAAGATCTCACGACATCCCGCAAAATGGGTTGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA]

[+] EMBL FR0060902            [GGGCGGCGCCATCACACCCCGGGACCCTCCAGACCGGCGTCGGGCTTTCTTCGCCAAATCAATCCCACAATCCCTCACACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCGTTACTGAGCCTCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGGGAAGATCTCACGACATCCCGCAAAATGGGTTGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA]




>consensus_1392#1
GGGCGGCGCCATCACACCCCGGGACCCTCCAGACCGGCGTCGGGCTTTCTTCGCCAAATC
AATCCCACAATCCCTCACACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCG
TTACTGAGCCTCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGG
GGAAGATCTCACGACATCCCGCAAAATGGGTTGTGTTTCCTGTAACATCATCACAGCGGT
GTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1392#0      TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGC 60
consensus_1392#1      --------------------------------------GGGCGGCGCCATCACACCCCG- 21
                                                             *  *   ***  *** **** 

consensus_1392#0      AAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTT 120
consensus_1392#1      GGACCCTCCAGACCGGCGTCGGGCTTTCT-------TCGCCAAATCAATCCCACAATCCC 74
                        *       *  ***  **     *  *       **  ****    *   *** *   

consensus_1392#0      TCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTT 180
consensus_1392#1      TCA--------CACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCGTTACTG 126
                      **         **   * *******   *   * * ** *   **  *  *  * *  * 

consensus_1392#0      ACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATG 240
consensus_1392#1      AGCC---------TCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTG---GAACTATA 174
                      * **          *  ***   *** *  ***  * * *  * ** **   ***  ** 

consensus_1392#0      AAGCAGGTG-GATATTATAA-ATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATT 298
consensus_1392#1      CATCGGGGAAGATCTCACGACATCCCGCAAAAT--GGGTTGTGTTTCCTGTAACATCATC 232
                       * * **   *** * *  * **   * * ***  *            *  ** * *** 

consensus_1392#0      ACAGAGTCCCCAGCCCAGCCAAA-GCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGT 357
consensus_1392#1      ACAGCGGTGTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA-------- 284
                      **** *     ****   *   * * *  * * ** * *   *    * ***        

consensus_1392#0      TGTCCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCC 417
consensus_1392#1      ------------------------------------------------------------
                                                                                  

consensus_1392#0      CATGACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGG 477
consensus_1392#1      ------------------------------------------------------------
                                                                                  

consensus_1392#0      AACTGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT 518
consensus_1392#1      -----------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)