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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[TTGGGGCGCCACGCCCACAGTTGTGATAATTCTGTCAGGTAAAATAGCGCAGTCCGCCTTTAAACCAAATCCTCCAAATCTGGACTAAGAGTAGAGCAGAAGCCTGACTAAAAGAAGCCTCGATTGCATTAGTGTTCGGAGTGGAGCGCGGGGAAATAAGGGAAAGTTTGCTTCATCTTTGTGTGACGGGTCTTTAGTGCCAACATCTACATCATGTTCAGGTAGAGAGTGGCTTCATCGTACACATCATGCGGAAGCGCCTGGACAGGATCCGGTTCCGCGGCCAAAAACGGGAGGATTTTGTGGATTTGGCTGAGTCACCAGAACACTTCTGACACAGAATGCTCAGAAGACATTGTGAATAAATCTCAGTCCTCCCTCCGCTATTCAGAGGAGCTGAGGGATGTGGATGGAGGAGAACCTCAGAGTGATGCACAGGCAGGATCATTTTCTGCCGCTCTCCAGGATGATTCTCGATCCGACCTAGTTGAGATCAAAGGTCATCTAGAAATCGCCTTGTTAGAGAAACACTTCTTACAGGAGGAACTGAGGAAACTGAAAGAGGAGTCTA]
[+] EMBL BU807707 [TTGGGGCGCCACGCCCACAGTTGTGATAATTCTGTCAGGTAAAATAGCGCAGTCCGCCTTTAAACCAAATCCTCCAAATCTGGACTAAGAGTAGAGCAGAAGCCTGACTAAAAGAAGCCTCGATTGCATTAGTGTTCGGAGTGGAGCGCGGGGAAATAAGGGAAAGTTTGCTTCATCTTTGTGTGACGGGTCTTTAGTGCCAACATCTACATCATGTTCAGGTAGAGAGTGGCTTCATCGTACACATCATGCGGAAGCGCCTGGACAGGATCCGGTTCCGCGGCCAAAAACGGGAGGATTTTGTGGATTTGGCTGAGTCACCAGAACACTTCTGACACAGAATGCTCAGAAGACATTGTGAATAAATCTCAGTCCTCCCTCCGCTATTCAGAGGAGCTGAGGGATGTGGATGGAGGAGAACCTCAGAGTGATGCACAGGCAGGATCATTTTCTGCCGCTCTCCAGGATGATTCTCGATCCGACCTAGTTGAGATCAAAGGTCATCTAGAAATCGCCTTGTTAGAGAAACACTTCTTACAGGAGGAACTGAGGAAACTGAAAGAGGAGTCTA]
consensusID : consensus_1393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[CATTTTCTGCCGCTCTCCAGGATGATTCTCGATCCGACCTAGTTGAGATCAAAGGTCATCTAGAAATCGCCTTGTTAGAGAAACACTTCTTACCGGTCCAGTTAATCCCTCTGTCGGCTCCAAACGTGCCCTTCTCGCTATCACACCATGGCGGTTAGAGTCTGATCATATTTGTCCGTCCCAGAGGAGGAACTGAGGAAACTGAAAGAGGAGTCTAATGTGGACTCGCTGAGACAGGAGCTGGAGAAGGAGCGCAGCAGATGTGGCGAGCTGGAGCAGAAGATCAACGACATGCTGAGATCCAGCCTCGAGGACTCT]
[+] EMBL CA590192 [CATTTTCTGCCGCTCTCCAGGATGATTCTCGATCCGACCTAGTTGAGATCAAAGGTCATCTAGAAATCGCCTTGTTAGAGAAACACTTCTTACCGGTCCAGTTAATCCCTCTGTCGGCTCCAAACGTGCCCTTCTCGCTATCACACCATGGCGGTTAGAGTCTGATCATATTTGTCCGTCCCAGAGGAGGAACTGAGGAAACTGAAAGAGGAGTCTAATGTGGACTCGCTGAGACAGGAGCTGGAGAAGGAGCGCAGCAGATGTGGCGAGCTGGAGCAGAAGATCAACGACATGCTGAGATCCAGCCTCGAGGACTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1393#0 TTGGGGCGCCACGCCCACAGTTGTGATAATTCTGTCAGGTAAAATAGCGCAGTCCGCCTT 60
consensus_1393#1 ------------------------------------------------------------
consensus_1393#0 TAAACCAAATCCTCCAAATCTGGACTAAGAGTAGAGCAGAAGCCTGACTAAAAGAAGCCT 120
consensus_1393#1 ------------------------------------------------------------
consensus_1393#0 CGATTGCATTAGTGTTCGGAGTGGAGCGCGGGGAAATAAGGGAAAGTTTGCTTCATCTTT 180
consensus_1393#1 ------------------------------------------------------------
consensus_1393#0 GTGTGACGGGTCTTTAGTGCCAACATCTACATCATGTTCAGGTAGAGAGTGGCTTCATCG 240
consensus_1393#1 --------------------CATTTTCTGCCGC-TCTCCAGGATGATTCTCGATCCGACC 39
** *** * * * * **** ** * * * * *
consensus_1393#0 TACACATCATGCGGAAGCGCCTGGACAGGATCCGGTTCCGCGGCCAAAAACGGGAGGATT 300
consensus_1393#1 TAGTTGAGATCAAAGGTCATCTAGAAATCGCCTTGTT----AGAGAAACACT------TC 89
** ** * ** ** * * *** * *** ** *
consensus_1393#0 TTGTGGATTTGGCTGAGTCACCAGAACACTTCTGACACAGAATGCTCAGAA----GACAT 356
consensus_1393#1 TTACCGGTCCAGTTAATCCCTCTGTCGGCTCCAAACGTGCCCTTCTCGCTATCACACCAT 149
** * * * * * * * * ** * ** * *** * ***
consensus_1393#0 TGTGAATAAATCTCAGTCCTCCCTCCGCTATTCAGAGGAGCTGAGGGATGTGGATGGAGG 416
consensus_1393#1 GGCGGTTAGAGTCTGATCATATTTGTCCGTCCCAGAGGAGG-AACTGAGGAAACTGAAAG 208
* * ** * ** * * * ******** * ** * ** * *
consensus_1393#0 AGAACCTCAGAGTGA---TGCACAGGCAGGATCATTTTCTGCCGCTCTCCAGGATGATTC 473
consensus_1393#1 AGGAGTCTAATGTGGACTCGCTGAGACAGGAGCTGGAGAAGGAGCGCAGCAG-ATG--TG 265
** * * *** ** ** ***** * * ** * *** *** *
consensus_1393#0 TCGATCCGACCTAGTTGAGATCAAAGGTCATCTAGAAATCGCCTTGTTAGAGAAACACTT 533
consensus_1393#1 GCGAGCTGGAGCAG--AAGATCAACGA-CATGCTGAGATC---CAGCCTCGAGGACTCT- 318
*** * * ** ******* * *** ** *** * ** **
consensus_1393#0 CTTACAGGAGGAACTGAGGAAACTGAAAGAGGAGTCTA 571
consensus_1393#1 --------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |