These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [ACTACTTCTGACTACTGTGCTTTGGGATTATCTGCCCAGGCACATGATCCCAAAGCACTGCTCTGTAATTTCAGTTGGTATAGAAATGTATTTATTGTGACTTGTGCTTCTGTTACAAAGCCAAAGAACCTTATTTCATCTAAATATACAGCTGATCTTTAATTAAGCAACTAAGTACATAAATACACACTGCGAGAGGTCTTCCAGTTCAATATTTAATGTTTTGTGTCTAATAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACGCCATGCACAAAGCGGAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGATCGAGCCGCCAGGCCTGTTTCGGGGTAGAGGCGAGCATCCTAAACAGGGCATGCTGAAGAAAAGGATTCAACCAGAGGACATCATTATAAACTGCAGCAAAGAGGCTTGTATTCCGGTGCCTCCTGCTGGTCACCGTTGGAAGGAGGTTCGACACGACAACACTGTAACATGG] [+] EMBL BU807761 [ACTACTTCTGACTACTGTGCTTTGGGATTATCTGCCCAGGCACATGATCCCAAAGCACTGCTCTGTAATTTCAGTTGGTATAGAAATGTATTTATTGTGACTTGTGCTTCTGTTACAAAGCCAAAGAACCTTATTTCATCTAAATATACAGCTGATCTTTAATTAAGCAACTAAGTACATAAATACACACTGCGAGAGGTCTTCCAGTTCAATATTTAATGTTTTGTGTCTAATAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACGCCATGCACAAAGCGGAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGATCGAGCCGCCAGGCCTGTTTCGGGGTAGAGGCGAGCATCCTAAACAGGGCATGCTGAAGAAAAGGATTCAACCAGAGGACATCATTATAAACTGCAGCAAAGAGGCTTGTATTCCGGTGCCTCCTGCTGGTCACCGTTGGAAGGAGGTTCGACACGACAACACTGTAACATGG] consensusID : consensus_1398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [AGGAGGAGCAAAGTCGTTGGAGATGGTTTGGAAACGCCATTCCTTTCATCTTCCATTGACCCAACACATCCCTACTGCATCCATCATCAGACAAGAAACCAGTGAAAAATATCAGTGTCTCTAAGTATGTCTTCACCCTTTCATTGGCTTCCTTTTCATTAGGTGGGAAGAAGAGAAATATGAAGATGGAGTGAAATGGAGGTTCCTGGAACACAGTGGACCCTACTTCCCTCCTGAGTACCAGCCTCTGCCTGACAACGTCCACTTCTACTATGATGGGAAGAAAGTGAAGTTAAGCCTCGCAGCTGAAGAGGTGGCGCTGTTTTTTGCCCAAATGTTGGACCATGAGTACACCACAAAGAAGGTGTTCCGAGAGAACTTCTTTAAAGACTGGAGAAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACACCATGCACAAAGCGAAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGA] [+] EMBL CA590387 [AGGAGGAGCAAAGTCGTTGGAGATGGTTTGGAAACGCCATTCCTTTCATCTTCCATTGACCCAACACATCCCTACTGCATCCATCATCAGACAAGAAACCAGTGAAAAATATCAGTGTCTCTAAGTATGTCTTCACCCTTTCATTGGCTTCCTTTTCATTAGGTGGGAAGAAGAGAAATATGAAGATGGAGTGAAATGGAGGTTCCTGGAACACAGTGGACCCTACTTCCCTCCTGAGTACCAGCCTCTGCCTGACAACGTCCACTTCTACTATGATGGGAAGAAAGTGAAGTTAAGCCTCGCAGCTGAAGAGGTGGCGCTGTTTTTTGCCCAAATGTTGGACCATGAGTACACCACAAAGAAGGTGTTCCGAGAGAACTTCTTTAAAGACTGGAGAAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACACCATGCACAAAGCGAAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1398#0 ------------------------------------------------------------ consensus_1398#1 AGGAGGAGCAAAGTCGTTGGAGATGGTTTGGAAACGCCATTCCTTTCATCTTCCATTGAC 60 consensus_1398#0 ------------------------------------------------------------ consensus_1398#1 CCAACACATCCCTACTGCATCCATCATCAGACAAGAAACCAGTGAAAAATATCAGTGTCT 120 consensus_1398#0 -------------------------------------ACTACTTCTGACTACTGTGCTTT 23 consensus_1398#1 CTAAGTATGTCTTCACCCTTTCATTGGCTTCCTTTTCATTAGGTGGGAAGAA-GAGAAAT 179 * ** * ** * * * * consensus_1398#0 GGGATTATCTGCCCAGGCACATGATCCCAAAGCAC--TGCTCTGTAATTTCAGTTGGTAT 81 consensus_1398#1 ATGAAGATGGAGTGAAATGGAGGTTCCTGGAACACAGTGGACCCTACTTCCCTCCTGAGT 239 ** ** * * * *** * *** ** * ** ** * * * consensus_1398#0 AGAAATGTATTTATTGTGACTTGTGCTTCTGTTACAAAGCCAAAGAACCTTATTT----- 136 consensus_1398#1 ACCAGCCTCTGCCTGACAACGTCCACTTCTACTATGATGGGAAGAAAGTGAAGTTAAGCC 299 * * * * * ** * ***** ** * * ** ** * ** consensus_1398#0 ---CATCTAAATATACAGC--TGATCTTTAATTAAGCAACTAAGTACATAAATACACACT 191 consensus_1398#1 TCGCAGCTGAAGAGGTGGCGCTGTTTTTTGCCCAAATG--TTGGACCATGAGTACACCAC 357 ** ** ** * ** ** * *** ** * * *** * ***** consensus_1398#0 GCGAGAGGTCTTCCAGTTCAA--TATTTAATGTTTTGTGTCTAATAAGGAAATGACTGAT 249 consensus_1398#1 AAAGAAGGTGTTCCGAGAGAACTTCTTTAAAGACTGG-----AGAAAGGAAATGACTGAT 412 **** **** ** * ***** * * * * *************** consensus_1398#0 GCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACGCCATG 309 consensus_1398#1 GCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACACCATG 472 ****************************************************** ***** consensus_1398#0 CACAAAGCGGAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAA 369 consensus_1398#1 CACAAAGCGAAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAA 532 ********* ************************************************** consensus_1398#0 GAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAG 429 consensus_1398#1 GAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAG 592 ************************************************************ consensus_1398#0 CGCATTGGCAACTTCAAGATCGAGCCGCCAGGCCTGTTTCGGGGTAGAGGCGAGCATCCT 489 consensus_1398#1 CGCATTGGCAACTTCAAGA----------------------------------------- 611 ******************* consensus_1398#0 AAACAGGGCATGCTGAAGAAAAGGATTCAACCAGAGGACATCATTATAAACTGCAGCAAA 549 consensus_1398#1 ------------------------------------------------------------ consensus_1398#0 GAGGCTTGTATTCCGGTGCCTCCTGCTGGTCACCGTTGGAAGGAGGTTCGACACGACAAC 609 consensus_1398#1 ------------------------------------------------------------ consensus_1398#0 ACTGTAACATGG 621 consensus_1398#1 ------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |