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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TTCGCTTTAGCGTGGTATGATTTAGGTGCGCCTCGCTCGTCTTTTGCTCCTTTGTTTTGTGTTTTGCATTCGTGTGTTTCGCACTGTCATCTTTACATCCTAAAAATGAAACATAATGCATGCTGCTATTCGTTTGTTTACAAATGCTAACCAAAGCTAACGGTTAGCTAATAGTTGTTTGCTAGCTGAAGTGCACATGTCCTGCTTCCTTCTGATTTCTTACTTTTTCAGTGTTTCCTCGAAACTTGCAGTTAGAAATAAGGGATGTTGGCGTGCCGTCATGTGTTTAAGGGGTTGTTTTTTCTGCCTTTGACAGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGGAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATT]
[+] EMBL CA588292 [TTCGCTTTAGCGTGGTATGATTTAGGTGCGCCTCGCTCGTCTTTTGCTCCTTTGTTTTGTGTTTTGCATTCGTGTGTTTCGCACTGTCATCTTTACATCCTAAAAATGAAACATAATGCATGCTGCTATTCGTTTGTTTACAAATGCTAACCAAAGCTAACGGTTAGCTAATAGTTGTTTGCTAGCTGAAGTGCACATGTCCTGCTTCCTTCTGATTTCTTACTTTTTCAGTGTTTCCTCGAAACTTGCAGTTAGAAATAAGGGATGTTGGCGTGCCGTCATGTGTTTAAGGGGTTGTTTTTTCTGCCTTTGACAGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGGAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATT]
consensusID : consensus_1406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AAAGTAACATTTCCGGTTGCGATCCGAACTATGCGCCGCGGCGCGCAGTTGTCATTCGCTTTAGCGTGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGAAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATTCAGGCCTCTCCACCCCAAAAAACAGAGAAAAAGGAGTCTCCAGTTCCAGCCCAGCTATCTCCTCTGCAGGGCCAGAGTGTGCTGAGTTTCAGCCCCTCGCGGACAGCCAGTACGAGTCCCAAGTTCTCTCCGAGCTGTGTCCCTGGGTACAGTCCCTCTCTCAACAACCCTTCAACCCCGAACAGCGCGGGAACAG]
[+] EMBL BU807811 [AAAGTAACATTTCCGGTTGCGATCCGAACTATGCGCCGCGGCGCGCAGTTGTCATTCGCTTTAGCGTGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAGTATGATAGATAAGGCACTAAGGATGAGAAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGCCTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACTGTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGCAACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGCTCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGGTATTCAGGCCTCTCCACCCCAAAAAACAGAGAAAAAGGAGTCTCCAGTTCCAGCCCAGCTATCTCCTCTGCAGGGCCAGAGTGTGCTGAGTTTCAGCCCCTCGCGGACAGCCAGTACGAGTCCCAAGTTCTCTCCGAGCTGTGTCCCTGGGTACAGTCCCTCTCTCAACAACCCTTCAACCCCGAACAGCGCGGGAACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1406#0 TTCGCTTTAGCGTGGTATGATTTAGGTGCGCCTCGCTCGTCTTTTGCTCCTTTGTTTTGT 60
consensus_1406#1 ------------------------------------------------------------
consensus_1406#0 GTTTTGCATTCGTGTGTTTCGCACTGTCATCTTTACATCCTAAAAATGAAACATAATGCA 120
consensus_1406#1 ------------------------------------------------------------
consensus_1406#0 TGCTGCTATTCGTTTGTTTACAAATGCTAACCAAAGCTAACGGTTAGCTAATAGTTGTTT 180
consensus_1406#1 ------------------------------------------------------------
consensus_1406#0 GCTAGCTGAAGTGCACATGTCCTGCTTCCTTCTGATTTCTTACTTTTTCAGTGTTTCCTC 240
consensus_1406#1 ------------------------------------------------------------
consensus_1406#0 GAAACTTGCAGTTAGAAATAAGGGATGT-TGGCGTGCCGTCATGTGTTTAAGGGGTTGTT 299
consensus_1406#1 -AAAGTAACATTTCCGGTTGCGATCCGAACTATGCGCCGCGGCGCGC------AGTTGTC 53
*** * ** ** * * * * **** * * *****
consensus_1406#0 TTTTCTGCCTTTGACAGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAG 359
consensus_1406#1 ATTC--GCTTTAGCGTGTCTGATAAACAATGACGACTCCATCGAGGGAGGGGGTACCCAG 111
** ** ** * ********************************************
consensus_1406#0 TATGATAGATAAGGCACTAAGGATGAGGAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGC 419
consensus_1406#1 TATGATAGATAAGGCACTAAGGATGAGAAGGGAGGAACAGGCTCGCCAGGTGGTTCTGGC 171
*************************** ********************************
consensus_1406#0 CTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACT 479
consensus_1406#1 CTGGGCTGTGCTCAATGTCTCTTTGGCTGGAATGATCTACACCGAGATGTCGGGAAAACT 231
************************************************************
consensus_1406#0 GTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGC 539
consensus_1406#1 GTTAAGTCGATATTATAATATCACCTACTGGCCTATATGGTATATTGAGCTGGTGTTGGC 291
************************************************************
consensus_1406#0 AACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGC 599
consensus_1406#1 AACTCTGTTTAGCCTGAACGCTGTTTTTGACTTCTGGAAATATTTCAAATACACTATGGC 351
************************************************************
consensus_1406#0 TCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGG 659
consensus_1406#1 TCCTTCCACGATAGCTCTAAGCCCAGAGCAGCACCGTCTTCTCGGTCTGAGAAACACAGG 411
************************************************************
consensus_1406#0 TATT-------------------------------------------------------- 663
consensus_1406#1 TATTCAGGCCTCTCCACCCCAAAAAACAGAGAAAAAGGAGTCTCCAGTTCCAGCCCAGCT 471
****
consensus_1406#0 ------------------------------------------------------------
consensus_1406#1 ATCTCCTCTGCAGGGCCAGAGTGTGCTGAGTTTCAGCCCCTCGCGGACAGCCAGTACGAG 531
consensus_1406#0 ------------------------------------------------------------
consensus_1406#1 TCCCAAGTTCTCTCCGAGCTGTGTCCCTGGGTACAGTCCCTCTCTCAACAACCCTTCAAC 591
consensus_1406#0 --------------------
consensus_1406#1 CCCGAACAGCGCGGGAACAG 611
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |