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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAACAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGAGTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA]
[+] EMBL BU807682 [TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAA AAATAGCCCAAACCTCAACAACACATGAGTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA]
[+] EMBL FR0061068 [ tCATCCGAAGAAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGACTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGTGCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGTAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACAT ]
consensusID : consensus_1412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGGTCTCC]
[+] EMBL CA590297 [AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGGTCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1412#0 ----TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTT 56
consensus_1412#1 AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTT 60
**************************************** ***************
consensus_1412#0 AAAACAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGA 116
consensus_1412#1 AAAACAACATCCGAAGGAAAAAGTTTTTTAA-AAATAGCCCAAAGATGGAGGTGGCCCTC 119
****************** ************ * ******** * * *
consensus_1412#0 GTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCT 176
consensus_1412#1 TCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCC-AGCTGCTGGAGGA 178
* *** * * * ** * * ** * * ** * ***
consensus_1412#0 GACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCT-- 234
consensus_1412#1 GAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTA 238
** * ** ** * ** * * * * * * * * * *
consensus_1412#0 -GCCTCTGAGC---CAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTT 290
consensus_1412#1 GGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTG 298
* ***** ** * * ** ** * * * ** *** *
consensus_1412#0 TGGAATC---AAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTG 347
consensus_1412#1 TTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTG 358
* ** * ************************************************
consensus_1412#0 CAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAA 407
consensus_1412#1 CAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAA 418
**************** *** **************** ********** **********
consensus_1412#0 TCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCC 467
consensus_1412#1 TCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCC 478
************************************************************
consensus_1412#0 AAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCC 527
consensus_1412#1 AAACATCTTATACCAAAAAG-GTCTCC--------------------------------- 504
******************** ** *
consensus_1412#0 GATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGG 587
consensus_1412#1 ------------------------------------------------------------
consensus_1412#0 ATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA 633
consensus_1412#1 ----------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |