These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [ACCCGGACTGGTCGGAACCGACAGATATCCACAAATGGGCAATTGTAACCAGTAGGCTCCTCTTTAAATCCGTCCATCCGCACTTTCGACCACATCAGACGCCGTAACAGCGAGGCGATCTTTAAGTCAACCATCTCTTAACTTTGAGAGACACCTGAAGTCAGATAAAATGGCAGCAATTCCCTCAAGTGGCTCCCTCGTGGCCACCCACGACTATTACAGACGACGCCTTGGTTCTGCCTCCAGCAGCAGCTCCTGTGGCAGCGCAGAATACACAGGCGAGGTCATTCCTCACCACCCAGGGCTTCCAAGGCAAGATTCTGGACACTGGTGGACTTCATTTTTCTTCGCCAAACAGAACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATGACGAGGGCGCCCGTTACCCGTAGCGTGGAGTTTTCCTGTTTGTATAGTTCCTTTTATATCGACCAGAGGTTTTTCATTATGTTCTT] [+] EMBL BU805173 [ACCCGGACTGGTCGGAACCGACAGATATCCACAAATGGGCAATTGTAACCAGTAGGCTCCTCTTTAAATCCGTCCATCCGCACTTTCGACCACATCAGACGCCGTAACAGCGAGGCGATCTTTAAGTCAACCATCTCTTAACTTTGAGAGACACCTGAAGTCAGATAAAATGGCAGCAATTCCCTCAAGTGGCTCCCTCGTGGCCACCCACGACTATTACAGACGACGCCTTGGTTCTGCCTCCAGCAGCAGCTCCTGTGGCAGCGCAGAATACACAGGCGAGGTCATTCCTCACCACCCAGGGCTTCCAAGGCAAGATTCTGGTCACTGGTGGACTTCATTTTTCTTCGCCAAACAGAACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAAC ] [+] EMBL FR0055353 [ GCAGAATACACAGGCGAGGTCATTCCTCACCACCCAGGGCTTCCAAGGCAAGATTCTGGACACTGGTGGACTTCATTTTTCTTCGCCAAACAGAACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATGACGAGGGCGCCCGTTACCCGTAGCGTGGAGTTTTCCTGTTTGTATAGTTCCTTTTATATCGACCAGAGGTTTTTCATTATGTTCTT] consensusID : consensus_1420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [GAAAAAGGAACAACGAAAGGGGGACAATGAAAAAAAAAAAACAGAACCCCTGGGGGGGGCCAGTTACCAACTTTTTGCCCCCTTAACCCGGGCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAATGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATCACGAGGGCGCCCGTTACCCGTACCGTGGAGTTTTCCTGGCT] [+] EMBL FR0056125 [GAAAAAGGAACAACGAAAGGGGGACAATGAAAAAAAAAAAACAGAACCCCTGGGGGGGGCCAGTTACCAACTTTTTGCCCCCTTAACCCGGGCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCAATGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCAGCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCTGACCCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCGGAGATCACGAGGGCGCCCGTTACCCGTACCGTGGAGTTTTCCTGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1420#0 ACCCGGACTGGTCGGAACCGACAGATATCCACAAATGGGCAATTGTAACCAGTAGGCTCC 60 consensus_1420#1 ------------------------------------------------------------ consensus_1420#0 TCTTTAAATCCGTCCATCCGCACTTTCGACCACATCAGACGCCGTAACAGCGAGGCGATC 120 consensus_1420#1 ------------------------------------------------------------ consensus_1420#0 TTTAAGTCAACCATCTCTTAACTTTGAGAGACACCTGAAGTCAGATAAAATGGCAGCAAT 180 consensus_1420#1 ------------------------------------------------------------ consensus_1420#0 TCCCTCAAGTGGCTCCCTCGTGGCCACCCACGACTATTACAGACGACGCCTTGGTTCTGC 240 consensus_1420#1 ------------------------------------------------------------ consensus_1420#0 CTCCAGCAGCAGCTCCTGTGGCAGCGCAGAATACACAGGCGAGGTCATTCCTCACCACCC 300 consensus_1420#1 -------------------------------------GAAAAAGGAA--CAACGAAAGGG 21 * * * * * * * consensus_1420#0 AGGGCTTCCAAGGCAAGATTCTGGACAC-TGGTGGACTTCATTTTTCTTCGCCAAACAGA 359 consensus_1420#1 GGACAATGAAAAAAAAAAAACAGAACCCCTGGGGGGGGCCAGTTACCAACTTTTTGCCCC 81 * * ** ** * * * ** * *** ** ** ** * * * consensus_1420#0 ACCAGCCCGGCCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCA 419 consensus_1420#1 CTTAACCCGGGCTGCAAAATGGATCCGACCTCCAAAAGAACGGAACCTACACAGTGGCCA 141 * ***** ************************************************* consensus_1420#0 ACGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCA 479 consensus_1420#1 ATGGCCAGGTGACCTGCATCGCCAAGGAGATGGTTCTGAAGCGGCAACTCAGCGAAACCA 201 * ********************************************************** consensus_1420#0 GCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCT 539 consensus_1420#1 GCGACAGCGGGAAGCCCGAACAACAGCAAACAACCCCCGTGCCCCCCCCATCCTAGACCT 261 ************************************************************ consensus_1420#0 GACCCCCCC-ACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCG 598 consensus_1420#1 GACCCCCCCCACCCCACCCGAGGTCCCCTTTCGCTATCGTCTTGCCGTCCGTCACAGTCG 321 ********* ************************************************** consensus_1420#0 GAGATGACGAGGGCGCCCGTTACCCGTAGCGTGGAGTTTTCCTGTTTGTATAGTTCCTTT 658 consensus_1420#1 GAGATCACGAGGGCGCCCGTTACCCGTACCGTGGAGTTTTCCTGGCT------------- 368 ***** ********************** *************** * consensus_1420#0 TATATCGACCAGAGGTTTTTCATTATGTTCTT 690 consensus_1420#1 -------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |