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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence
[CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTTCAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGCTTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGACTGAGAGCGACTACCCATACACAGCCTTTGAG]
[+] EMBL CA845122 [CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTTCAGTATCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCTGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGCTTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGACTGAGAGCGACTACCCATACACAGCCTTTGAG]
[+] EMBL FR0058408 [ TTATTTCAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACACCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCA ]
consensusID : consensus_1429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCTTTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA]
[+] EMBL FR0057024 [TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCTTTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1429#0 CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTT 60
consensus_1429#1 ------------------------------------------------------------
consensus_1429#0 CAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGG 120
consensus_1429#1 ------------------------------------------------------------
consensus_1429#0 CGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGA 180
consensus_1429#1 ------------------------------------------------------------
consensus_1429#0 ACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACC 240
consensus_1429#1 ------------------------------------------------------------
consensus_1429#0 AGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGA 300
consensus_1429#1 ------------------------------------------------------------
consensus_1429#0 ACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCG 360
consensus_1429#1 TTGGATCTGTCGTC----GCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCT 56
* **** * ** ** * **** ***** * * ***
consensus_1429#0 ACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCT 420
consensus_1429#1 GCCTTTTCCGTCCTGGG---TTTGTTCCCCTCGCTG-----CAGGGAAGCTGTGGTAGCT 108
* *** * ** * * * *******************
consensus_1429#0 GCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGC 480
consensus_1429#1 GCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAAC 168
************************* ******************************** *
consensus_1429#0 TTGTCCCCCTG------------TCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCA 528
consensus_1429#1 TTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACA 228
*********** ** * *** * ** ** * * * **
consensus_1429#0 ACAACCATGGTTGCAACGGAGGTCTT----CCAAGCCAAGCCTTTGAATACATCAAATAC 584
consensus_1429#1 GCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAG 288
* * ** * *** ** ** * ** ** ** * *
consensus_1429#0 AATAAGGGACTGATG--ACTGAGAGCGACTACCCATACACAGCCTTTGAG---------- 632
consensus_1429#1 AAGAACAG-CTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGT 347
** ** * *** ** **** * ** ** ** ***
consensus_1429#0 ------
consensus_1429#1 GGGACA 353
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |