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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence
[AGCTCCAGGCGTGACTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCGGGGCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGCCCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCAGAGCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTTCCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATCTAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACCCAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGAACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACATCGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTAACAAAGACTCCGGGAGCAGAG]
[+] EMBL BU805194 [AGCTCCAGGCGTGACTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGCCCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCAGATCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTTCCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATCTAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACCCAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGAACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACATCGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTAACAA ]
[+] EMBL BU805099 [ GGGGCTTTTTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGCCCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCAGAGCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTTCCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATCTAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACCCAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGAACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACATCGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTAACAAAGACTCCGGGAGCAGAG]
consensusID : consensus_1432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[GGGCAACAGTAAACCCAACAGCAGGTCCAGCGGTCGCCCCTCCACTCCCTCAACCTCTGCTCCCACCTCGGCCGGCCCGGAGGGGGGAGGAGAGCCCAACGGTCGCGGACCCTCCCGTACCCCGAGCCAGCATAGTCAGAGCAGCAAGATGGAACCAGGCTCCGACCTGGAGATCAAGCCCCTGCAGAAGTTTGACTCGGAGACAAGAGCTCCAGGCGTGATTCTTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAAAAGAAGAACTCCGCCCAGCAGCC]
[+] EMBL BU805450 [GGGCAACAGTAAACCCAACAGCAGGTCCAGCGGTCGCCCCTCCACTCCCTCAACCTCTGCTCCCACCTCGGCCGGCCCGGAGGGGGGAGGAGAGCCCAACGGTCGCGGACCCTCCCGTACCCCGAGCCAGCATAGTCAGAGCAGCAAGATGGAACCAGGCTCCGACCTGGAGATCAAGCCCCTGCAGAAGTTTGACTCGGAGACAAGAGCTCCAGGCGTGATTCTTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCCTCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCTCATCCCTAAAGATGAAGAAAAAGAAGAACTCCGCCCAGCAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1432#0 AGCTCCAGGCGTGACTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCC 60
consensus_1432#1 --------------------------------------------------GGGCAACAGT 10
* *
consensus_1432#0 TCCTCCTGCTGCGGGGCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCT 120
consensus_1432#1 AAACCCAACAGCAGGTCCAGCGGTCGCCCCTCCA-------CTCCCTCAACCTCTGCTCC 63
** * ** ** ** ** * ** ***** **** *** * *
consensus_1432#0 CATCCCTAAAGATGAAGAAGAAGAAGAACTCCGCCCAGCAGCCAAAGTGACCCCCAAAGC 180
consensus_1432#1 CACCTCGGCCGGCCCGGAGGGGGGAGGAGA--GCCCAACGGTCGCGG--ACCCTC----- 114
** * * * ** * * ** * ***** * * * * **** *
consensus_1432#0 CCCGGAGCCCAAACTCCCCGTGTTTAAAGCCAACCAGGAACCAGACGCACTCACCCCTCA 240
consensus_1432#1 -CCGTACCCCGAGC-CAGCATAGTCAGAGC--------AGCAAGATGGAACCAGGCTCCG 164
*** * *** * * * * * * * *** * * *** * * ** * *
consensus_1432#0 GAGCAGAGGCGAGCCCAGAGAGGGGAGTCGGCCATCCAGCAAAGCAGAAGCAAAGACCTT 300
consensus_1432#1 ACCTGGAGATCAAGCCCCTGCAGAAGTTTGA----CTCGGAGACAAGAGCTCCAGGCGTG 220
*** * ** * * * * * * * * *** ** * *
consensus_1432#0 CCCCAGGAGGCAACCCAGCCCGGCTCCGCCCCCAAAACCCGCGCCCCCAAAACCTGCATC 360
consensus_1432#1 ATTCTTGCTGCT-CCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTGCTCCTCCTGCTCC 279
* * ** ** * ***** ** * ** * * * ***** *
consensus_1432#0 TAAGCCTGAACCCAAACCAGCGCCACATCCAGTGGAGGCCAAAGCTGCTGTGGAAAAACC 420
consensus_1432#1 TCCTCCTGCTGCTCCTCCTGCTGCTGCTCCTCCTGCTGCTCCTCCTGCAAGAAACGGCCT 339
* **** * ** ** * *** * ** **** * *
consensus_1432#0 CAAAGCAGAACCCAAACAAAAGGTGGTGATTTCAGGTCCCAGCAGCGAACGCGGCCCAGA 480
consensus_1432#1 CATCCCTAAAGATGAAGAAAAAGAAG-AACTCCG---CCCAGCAGCC------------- 382
** * ** ** **** * * * * * *********
consensus_1432#0 ACTGGAGGAGCTGGAGGGTCCCAACACCATCATGATCTGCATGGTCATCCTGCTCAACAT 540
consensus_1432#1 ------------------------------------------------------------
consensus_1432#0 CGGCCTGGCCATCCTCTTCGTGCACATTTTGTCATGAGACGTCGTCCTGGTCCTCAGGTA 600
consensus_1432#1 ------------------------------------------------------------
consensus_1432#0 ACAAAGACTCCGGGAGCAGAG 621
consensus_1432#1 ---------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |