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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence
[TCCGCAACAATGAGTGAATCACTGGTGGTTTGTGAGGTGGATGAAGACCTGGTTAAAAAGCTGAAGGAGTTCCGTTTCCGGAAGGAGACCAACAACGCAGCCATCATAATGAAGATTGATAAAGACAAGCAGCTGGTGATTCTGGAAGAAGAGCACGAGGACATTTCTCCTGACGATCTAAAGGATGAGCTTCCTGAGAGACAGCCCAGGTTCATCGTCTACAGTTACAAGTACCAGCACGATGACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGGGTTTGAGATCAGAAACACAGAGGACCTGACAGAGGAGTGGCTCAGAGAGAAACTGGGCTTCTTCGGCTAAATGCCGTCTCCTGAGGAGGATCCCCTTCACACGGGTTGGGAGAAGAAGATAAAAACCCAGAAAGATTTAGCATTTTCCTCTTTGTGTCAGACCTGATTTAAATGGTTGTTGTGACTGATTCTCTGCTGGGCTGTGGGCTCCTCTTAACAGGGGTGGTGGGATATGCAGCTCTGGTGC]
[+] EMBL CA588947 [TCCGCAACAATGAGTGAATCACTGGTGGTTTGTGAGGTGGATGAAGACCTGGTTAAAAAGCTGAAGGAGTTCCGTTTCCGGAAGGAGACCAACAACGCAGCCATCATAATGAAGATTGATAAAGACAAGCAGCTGGTGATTCTGGAAGAAGAGCACGAGGACATTTCTCCTGACGATCTAAAGGATGAGCTTCCTGAGAGACAGCCCAGGTTCATCGTCTACAGTTACAAGTACCAGCACGATGACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGGAGCAAAAATAAACTGGTACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAACACAGAGGACCTGACAGAGGAGTGGCTCAGAGAGAAACTGGGCTTCTTCGGCTAAATGCCGTCTCCTGAGGAGGATCCCCTTCACACGGGTTGGGAGAAGAAGATAAAAACCCAGAAAGATTTAGCATTTTCCTCTTTGTGTCAGACCTGATTTAAATGGTTGTTGTGACTGATTCTCTGCTGGGCTGTGGGCTCCTCTTAACAGGGGTGGTGGGATATGCAGCTCTGGTGC]
[+] EMBL FR0058944 [ TTGTGAGGTGGATGAAGACCTGGTTAAAAAGCTGAAGGAGTTCCGTTTCCGGAAGGAGACCAACAACGCAGCCATCATAATGAAGATTGATAAAGACAAGCAGCTGGTGATTCTGGAAGAAGAGCACGAGGACATTTCTCCTGACGATCTAAAGGATGAGCTTCCTGAGAGACAGCCCAGGTTCATCGTCTACAGTTACAAGTACCAGCACGATGACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGGGTTTGAGATCAGAAAC ]
consensusID : consensus_1444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[AGATGAGTGAATCACTCGGTGGTGTTGTGAGGTTGGATGTAAGACTCTGGTGTAGAAAAGCTTGAAGAGAGTTCCTGTTTGCCGGAAGGAGGACCAACTAACGCAGCTCATCATGAAATGAAGAGTTGATAATAGACAAGGCAGCCTGGGTGATTCTTGGAAGTAAGAGCACGGAGGACAGTTTCTTCCTGACGACTCTAAAGGATGGAGCTTCCGTGAGAGACGAGCCCAGGTTCATCTGTCTACAGTTACAATGTACCAGCACGATGNACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGCCCAGTGGGCTGCAGACCGGAGCAGTAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAAC]
[+] EMBL FR0058825 [AGATGAGTGAATCACTCGGTGGTGTTGTGAGGTTGGATGTAAGACTCTGGTGTAGAAAAGCTTGAAGAGAGTTCCTGTTTGCCGGAAGGAGGACCAACTAACGCAGCTCATCATGAAATGAAGAGTTGATAATAGACAAGGCAGCCTGGGTGATTCTTGGAAGTAAGAGCACGGAGGACAGTTTCTTCCTGACGACTCTAAAGGATGGAGCTTCCGTGAGAGACGAGCCCAGGTTCATCTGTCTACAGTTACAATGTACCAGCACGATGNACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGCCCAGTGGGCTGCAGACCGGAGCAGTAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1444#0 TCCGCAACAATGAGTGAATCACT-GGTGGT-TTGTGAGGT-GGATG-AAGAC-CTGGTT- 54
consensus_1444#1 -------AGATGAGTGAATCACTCGGTGGTGTTGTGAGGTTGGATGTAAGACTCTGGTGT 53
************** ****** ********* ***** ***** *****
consensus_1444#0 -AAAAAGCTGAAGGAG---TTCCGTTT-CCGGAAGGAG-ACCAAC-AACGCAGC-CATCA 106
consensus_1444#1 AGAAAAGCTTGAAGAGAGTTCCTGTTTGCCGGAAGGAGGACCAACTAACGCAGCTCATCA 113
******* * *** * * **** ********** ****** ******** *****
consensus_1444#0 T--AATGAAGA-TTGATAA-AGACAAG-CAGCT--GGTGATTCT-GGAAG-AAGAGCACG 157
consensus_1444#1 TGAAATGAAGAGTTGATAATAGACAAGGCAGCCTGGGTGATTCTTGGAAGTAAGAGCACG 173
* ******** ******* ******* **** ********* ***** *********
consensus_1444#0 -AGGACA--TTTCTCCTGACGA-TCTAAAGGATG-AGCTTCC-TGAGAGAC-AGCCCAGG 210
consensus_1444#1 GAGGACAGTTTCTTCCTGACGACTCTAAAGGATGGAGCTTCCGTGAGAGACGAGCCCAGG 233
****** ** ********* *********** ******* ******** ********
consensus_1444#0 TTCATC-GTCTACAGTTACAA-GTACCAGCACGATGA-CGGACGCGTCTCCTACCCACTC 267
consensus_1444#1 TTCATCTGTCTACAGTTACAATGTACCAGCACGATGNACGGACGCGTCTCCTACCCACTC 293
****** ************** ************** **********************
consensus_1444#0 TGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGG 327
consensus_1444#1 TGCTTCATCTTCTCCAGCCCAGTGGGCTGCAGACCGGAGCAGTAGATGATGTACGCAGGG 353
***************** ************************ *****************
consensus_1444#0 AGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGGGTTTGAGATCAGAAACACA 387
consensus_1444#1 AGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAAC--- 410
**************************************** ****************
consensus_1444#0 GAGGACCTGACAGAGGAGTGGCTCAGAGAGAAACTGGGCTTCTTCGGCTAAATGCCGTCT 447
consensus_1444#1 ------------------------------------------------------------
consensus_1444#0 CCTGAGGAGGATCCCCTTCACACGGGTTGGGAGAAGAAGATAAAAACCCAGAAAGATTTA 507
consensus_1444#1 ------------------------------------------------------------
consensus_1444#0 GCATTTTCCTCTTTGTGTCAGACCTGATTTAAATGGTTGTTGTGACTGATTCTCTGCTGG 567
consensus_1444#1 ------------------------------------------------------------
consensus_1444#0 GCTGTGGGCTCCTCTTAACAGGGGTGGTGGGATATGCAGCTCTGGTGC 615
consensus_1444#1 ------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |