These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 375 fasta sequence [GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAGTCCTAAAGCCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTTTACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGATGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAATTAAAAATGTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGTACCCAATTTTTG] [+] EMBL CA330336 [GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAGTCCTAAAGCCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTTTACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGATGATCGAGGGATCTGAATGAAC ] [+] EMBL FR0056045 [ ATGAGGT GACAG CATG ACCTAGACAGTTTTACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGATGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAATTAAAAATGTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGTACCCAATTTTTG] consensusID : consensus_1448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAGTCCTAAGGCCCAGAGCGGCCAGGGCATGAGGGGACAGCATGGCCTAGACAGTTTTACCTTGGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGACACCCAAGATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC] [+] EMBL FR0056649 [GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAGTCCTAAGGCCCAGAGCGGCCAGGGCATGAGGGGACAGCATGGCCTAGACAGTTTTACCTTGGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGACACCCAAGATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1448#0 --------GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGG 52 consensus_1448#1 GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGG 60 **************************************************** consensus_1448#0 CTGCGCTCAAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAG 112 consensus_1448#1 CTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAG 120 ********* ****************** ********************** ***** ** consensus_1448#0 TCCTAAAGCCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTT 172 consensus_1448#1 TCCTAAGGCCCAGAGCGGCCAGGGCATGAGG--GGACAGCAT----GGCCTAGACAGTTT 174 ****** ***** ******** ********* ******* ************ consensus_1448#0 TACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAAC 232 consensus_1448#1 TACCTTGGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGAC 234 ******* **************** **** *********** ****** * **** ** consensus_1448#0 ACCCAAGATGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAA 292 consensus_1448#1 ACCCAAGATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC------- 287 ********** ** ***** ** ** ******** **** *** ***** consensus_1448#0 TTAAAAATGTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGG 352 consensus_1448#1 ------------------------------------------------------------ consensus_1448#0 GGGGGCCCGGTACCCAATTTTTG 375 consensus_1448#1 ----------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |