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Takifugu rubripes
cluster # 1448 cluster # 1448       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1448#0 length = 375 sequences # 2  
 consensus_1448#1 length = 287 sequences # 1  
consensusID : consensus_1448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 375
fasta sequence 
                              [GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAGTCCTAAAGCCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTTTACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGATGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAATTAAAAATGTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGTACCCAATTTTTG]

[+] EMBL CA330336             [GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAGTCCTAAAGCCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTTTACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGATGATCGAGGGATCTGAATGAAC                                                                                                                 ]
[+] EMBL FR0056045            [                                                                                                                                         ATGAGGT  GACAG  CATG  ACCTAGACAGTTTTACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGATGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAATTAAAAATGTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCCGGTACCCAATTTTTG]




>consensus_1448#0
GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTC
AAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAGTCCTAAAG
CCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTTTACCTTGT
TTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAACACCCAAGA
TGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAATTAAAAAT
GTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGCCC
GGTACCCAATTTTTG

consensusID : consensus_1448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence 
                              [GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAGTCCTAAGGCCCAGAGCGGCCAGGGCATGAGGGGACAGCATGGCCTAGACAGTTTTACCTTGGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGACACCCAAGATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC]

[+] EMBL FR0056649            [GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGGCTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAGTCCTAAGGCCCAGAGCGGCCAGGGCATGAGGGGACAGCATGGCCTAGACAGTTTTACCTTGGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGACACCCAAGATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC]




>consensus_1448#1
GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGG
CTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAG
TCCTAAGGCCCAGAGCGGCCAGGGCATGAGGGGACAGCATGGCCTAGACAGTTTTACCTT
GGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGACACCCAA
GATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1448#0      --------GCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGG 52
consensus_1448#1      GGAGACAGGCAGGCCTAAGCTACATCCGCTTCTCCGCCATCTGCGCCAGCGCAGTGCGGG 60
                              ****************************************************

consensus_1448#0      CTGCGCTCAAGCCGCAGTTCAAGACCGAAGCCATGAGGGTCGCAGAGTCGAACGTCAAAG 112
consensus_1448#1      CTGCGCTCAGGCCGCAGTTCAAGACCGAGGCCATGAGGGTCGCAGAGTCGAGCGTCAGAG 120
                      ********* ****************** ********************** ***** **

consensus_1448#0      TCCTAAAGCCCAAAGCGGCCACGGCATGAGGTGGGACAGCNCATGGNACCTAGACAGTTT 172
consensus_1448#1      TCCTAAGGCCCAGAGCGGCCAGGGCATGAGG--GGACAGCAT----GGCCTAGACAGTTT 174
                      ****** ***** ******** *********  *******        ************

consensus_1448#0      TACCTTGTTTTGTGGGAGTTCTGGCCTGTTGCCTGTAGAGGAGAGAGAAAGATGGGAAAC 232
consensus_1448#1      TACCTTGGTTTGTGGGAGTTCTGGTCTGTGGCCTGTAGAGGGGAGAGAGGGGGGGGAGAC 234
                      ******* **************** **** *********** ******  *  **** **

consensus_1448#0      ACCCAAGATGATCGAGGGATCTGAATGAACTACCTGATTTCCTGCAAATTTTCTTTGTAA 292
consensus_1448#1      ACCCAAGATGGTCTGGGGATGTGGGTGGGCTACCTGAGTTCCGGCAGGTTTTC------- 287
                      ********** **  ***** **  **  ******** **** ***  *****       

consensus_1448#0      TTAAAAATGTATTAAAGACATTGGGAACACAAAAAAAAAAAAAAAAAAAAAACCCCCGGG 352
consensus_1448#1      ------------------------------------------------------------
                                                                                  

consensus_1448#0      GGGGGCCCGGTACCCAATTTTTG 375
consensus_1448#1      -----------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)