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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCACCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTTGTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC]
[-] EMBL CA332994 [CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCACCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCCCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCTGACCTGGAGAATTGAAAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC]
[+] EMBL FR0057730 [ CATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTTGTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAG ]
consensusID : consensus_1467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT]
[+] EMBL FR0056650 [CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1467#0 CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCA 60
consensus_1467#1 ------------------------------------------------------------
consensus_1467#0 CCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGT 120
consensus_1467#1 ------------------------------------------------------------
consensus_1467#0 CTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACC 180
consensus_1467#1 ------------------------------------------------------------
consensus_1467#0 CTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTT 240
consensus_1467#1 --------------------CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTT 40
***************** * ***** ******* ******
consensus_1467#0 TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTT 300
consensus_1467#1 TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTT 100
**************************************************** *******
consensus_1467#0 GTTTTGTC-TGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTA 359
consensus_1467#1 GTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGA 160
******** ************************* ***** ****** ********* *
consensus_1467#0 TGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGT-TAACTGCAACAAGGTTT 418
consensus_1467#1 TGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT 220
*** ***************************** **** ** ** ***** * * **
consensus_1467#0 TAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGC 478
consensus_1467#1 ------------------------------------------------------------
consensus_1467#0 CTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGT 538
consensus_1467#1 ------------------------------------------------------------
consensus_1467#0 AAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC 595
consensus_1467#1 ---------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |