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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[TCCCCATGGCGCATAGCAGACATCAGAAGCAGGACAGCCTGCCTAGAAGGCTGGCTGGATGCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGGAGCGGCATTACTTCTCATCCTGGATGGAGCAAGCACGCAACACCCTTTGACTTAAGATTACAACAGTTGAACCAGCTGTAATTGAGGGATGGTCTCCTAGGTACAGCCAGCCACCGTGGCCGACTGCTGTGCAAACTGAATTTGTGCAGCCTTCAACCGCGGCCAACATGACGGACTACGACTCCGCCACCGCCTTCCTGGGGGAATGGGGCCGTTTCCAGAAGCAGGTCTTTTACCTCCTGTGCCTGCGGGCCATCCCCTGCGGCTACACCGCACTGTCCGTGGTCTTTCTGGCTGGCAGCCCGCACCACCACTGTCTCGTCCCCCCGCAAGCCAACCTGACACCTGCGTGGGAGAACAGCAGCATTCCGCTGGAGGAGAGAAGCGGCGGCGGCGCTCCGGAGCGCAGCTTCTGCTCCAGATACAAACTTACAGAGGTGCAGCGTTTTTCCGACAGGGGCTTGCTGCCCGCTGATGTTAACTGGTCTACCGTTGCAACAGAGGGCTGTTTGGACGGATGGCAGTACGATCAGAGCATCTACGCATCGAC]
[+] EMBL CA588164 [TCCCCATGGCGCATAGCAGACATCAGAAGCAGGACAGCCTGCCTAGAAGGCTGGCTGGATGCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGGAGCGGCATTACTTCTCATCCTGGATGGAGCAAGCACGCAACACCCTTTGACTTAAGATTACAACAGTTGAACCAGCTGTAATTGAGGGATGGTCTCCTAGGTACAGCCAGCCACCGTGGCCGACTGCTGTGCAAACTGAATTTGTGCAGCCTTCAACCGCGGCCAACATGACGGACTACGACTCCGCCACCGCCTTCCTGGGGGAATGGGGCCGTTTCCAGAAGCAGGTCTTTTACCTCCTGTGCCTGCGGGCCATCCCCTGCGGCTACACCGCACTGTCCGTGGTCTTTCTGGCTGGCAGCCCGCACCACCACTGTCTCGTCCCCCCGCAAGCCAACCTGACACCTGCGTGGGAGAACAGCAGCATTCCGCTGGAGGAGAGAAGCGGCGGCGGCGCTCCGGAGCGCAGCTTCTGCTCCAGATACAAACTTACAGAGGTGCAGCGTTTTTCCGACAGGGGCTTGCTGCCCGCTGATGTTAACTGGTCTACCGTTGCAACAGAGGGCTGTTTGGACGGATGGCAGTACGATCAGAGCATCTACGCATCGAC]
consensusID : consensus_1480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence
[AGGTAAACTTCAACAATGCTTTTCTTTGTGTGTCTGGATTGTTTGCTGAAAGAGATTGTGACCACGGTCAAATCAGAAAGATACATTATAGAAACATGTATATTTCATGCAATGCAATTTCCCTGTTGCACAGGCAGTAAAATGGTGATTCAGCTATTTTCTCTTCACTTTCATAATGTTGGTGTTCTGAAGCTCTTGTTTCAGAGGTCAGAACCTGACAGATTTTGAGATAAGAAAGGGGTAAGAGGATTAAATCAGATCAGCCAGATGTTGATTTCTACAGAAGCAGGACAGCCTGTACAAGCTGGCTGGCTGGATGCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGGAGCGGCAAAACTTCTCATCCTGGATGGAGCAAGCACGCAACACCCTTTGACTTAAGATTACAACAGTTGAACCAGCTGTAATTGAGGTAATCACCATTGTGATAATGAGCAATTAGGCAGAGCGGCGCTTAAAACAACAATAATCAGTAATGTAACATGCTTTTTATGACCGCTTGCACAAGATGTGCCATAATGGTGATGGAGTGTCGATGCTCCCACGAACCTCCTGTTACTGCTC]
[+] EMBL CA591033 [AGGTAAACTTCAACAATGCTTTTCTTTGTGTGTCTGGATTGTTTGTTGAAAGAGATTGTGACCACGGTCAAATCAGAAAGATACATTATAGAAACATGTATATTTCATGCAATGCAATTTCCCTGTTGCACAGGCAGTAAAATGGTGATTCAGCTATTTTCTCTTCACTTTCATAATGTTGGTGTTCTGAAGCTCTTGTTTCAGAGGTCAGAACCTGACAGATTTTGAGATAAGAAAGGGGTAAGAGGATTAAATCAGATCAGCCAGATGTTGATTTCTACAGAAGCAGGACAGCCTGTACAAGCTGGCTGGCTGGATGCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGGAGCGGCAAAACTTCTCATCCTGGATGGAGCAAGCACGCAACACCCTTTGACTTAAGATTACAACAGTTGAACCAGCTGTAATTGAGGTAATCACCATTGTGATAATGAGCAATTAGGCAGAGCGGCGCTTAAAACAACAATAATCAGTAATGTAACATGCTTTTTATGACCGCTTGCACAAGATGTGCCATAATGGTGATGGAGTGTCGATGCTCCCACGAACCTCCTGTTACTGCTC]
[+] EMBL CA588173 [ TGCTTTTCTTTGTGTGTCTGGATTGTTTGCTTAAAGAGATTGTGACCACGGTCAAATCAGAAAGATACATTATAGAAACATGTATATTTCATGCAATGCAATTTCCCTGTTGCACAGGCAGTAAAATGGTGATTCAGCTATTTTCTCTTCACTTTCATAATGTTGGTGTTCTGAAGCTCTTGTTTCAGAGGTCAGAACCTGACAGATTTTGAAATAAGAAAGGGGTAAGAGGATTAAATCAGATCAGCCAGATGTTGATTTCTACAGAAGCAGGACAGCCTGTACAAGCTGGCTGGCTGGATGCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGGAGCGGCAAAACTTCTCATCCTGGATGGAGCAAGCACGCAACACCCTTTGACTTAAGATTACAACAGTTGAACCAGCTGTAATTGAGGTAATCACCATTGTGATAATGAGCAATTAGGCAGAGCGGCGCTTAAAACAACAATAATCAGTAATGTAACATGCTTTTTATGACCGCTTGCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1480#0 TCCCCATGGCGCATAGCAGACATCAGAAGCAGGACAGCCTGCCTAGAAGGCTGGCTGGAT 60
consensus_1480#1 -------------------------------AGGTAAACTTCAACAATGCTTTTCTTTGT 29
* * ** * * * * ** *
consensus_1480#0 GCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGGAGCGGCATTACT 120
consensus_1480#1 GTGTC-TGGATTGTTTGCTGAAAGAGATTGTGACCACGGTCAAATCAGAAAGATACATTA 88
* * *** * ** * ***** * ** * *
consensus_1480#0 TCTCATCCTGGATGGAGCAAGCA-CGCAACACCCTT-TGACTTAAG-ATTACAACAGTTG 177
consensus_1480#1 TAGAAACATGTATATTTCATGCAATGCAATTTCCCTGTTGCACAGGCAGTAAAATGGT-G 147
* * * ** ** ** *** **** ** * * * * * * ** ** ** *
consensus_1480#0 AACCAGCTGTAATTGAGGGATGGTCTCCTAGGTACAGCCAGCCACCGTGGCCGACTGCTG 237
consensus_1480#1 ATTCAGCTATTTTC------TCTTCACTTTCATAATGTTGGTGTTCTGAAGCTCTTGTTT 201
* ***** * * * ** * * ** * * * * ** *
consensus_1480#0 TGCAAACTGAATTTGTGCAGCCTTCAACCGCGGCCAACATGACGGACTACGACTCCGCCA 297
consensus_1480#1 CAGAGGTCAGAACCTGACAGATTTTGA----GATAAGAAAGGGGTAAGAGGATTAAATCA 257
* * *** ** * * * * * * * * ** * **
consensus_1480#0 CCGCCTTCCTGGGGGAATGGGGCCGTTTCCAGAAGCAGGTC---TTTTACCTCCTGTGCC 354
consensus_1480#1 GATC------AGCCAGATGTTGATTTCTACAGAAGCAGGACAGCCTGTACAAGCTG-GCT 310
* * *** * * * ********** * * *** *** **
consensus_1480#0 TGCGGGCCATCCCCTGCGGCTACACCGCA---CTGTCCGTGGTCTTTCTGGCTGGCAGCC 411
consensus_1480#1 GGCTGG--ATGCGGAATGGTTCCACCACTTGTCTGACCTTTGACCTTGACACCGGTGG-- 366
** ** ** * ** * **** * *** ** * * * ** * ** *
consensus_1480#0 CGCACCACCACTGTCTCGTCCCCCCGCAAGCCAACCTG--ACACCT----GCGTGGGAGA 465
consensus_1480#1 AGCGGCAAAACT-TCTCATCCTGGATGGAGCAAGCACGCAACACCCTTTGACTTAAGATT 425
** ** *** **** *** *** * * * ***** * * **
consensus_1480#0 ACAGCAGC--ATTCCGCTGGAGGAGAGA-AGCGGCGGCGGCGCTCCGGAGCGCAGCTTCT 522
consensus_1480#1 ACAACAGTTGAACCAGCTGTAATTGAGGTAATCACCATTGTGATAATGAGCAATTAGGCA 485
*** *** * * **** * *** * * * * * **** *
consensus_1480#0 GCTCCAGATACAAACTTACAGAGGTGCAGCGTTTTTCCGACAGGGGCTTGCTGCCCGCTG 582
consensus_1480#1 GAGCGGCGCTTAAAACAACAATAAT-CAGTAATGT---AACATGCTTTTTATGACCGCTT 541
* * *** *** * *** * * *** * ** ** *****
consensus_1480#0 ATGTTAACTGGTCTACCGTTGCAACAGAGGGCTGTTTGGACGGATGGCAGTACGATCAGA 642
consensus_1480#1 GCACAAGATGTGCCATAATGGTGATGGAGTGTCGAT-GCTCCCACGAACCTCCTGTTACT 600
* ** * * * * * *** * * * * * * * * * * *
consensus_1480#0 GCATCTACGCATCGAC 658
consensus_1480#1 GCTC------------ 604
**
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |