These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGGATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATCAGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCCTCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAGCAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCCGGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATTTGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAACGTGTATAGAACTCAG] [+] EMBL BU804819 [GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGGATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATCAGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCCTCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAGCAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCCGGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATTTGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAACGTGTATAGAACTCAG] consensusID : consensus_1483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT] [+] EMBL FR0058088 [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT] [+] EMBL FR0058242 [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1483#0 GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGG 60 consensus_1483#1 ------------------------------------------------------------ consensus_1483#0 ATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATC 120 consensus_1483#1 ------------------------------------------------------------ consensus_1483#0 AGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCC 180 consensus_1483#1 ------------------------------------------------------------ consensus_1483#0 TCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAG 240 consensus_1483#1 ------------------------------------------------------------ consensus_1483#0 CAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCC 300 consensus_1483#1 -----------TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTC 49 * * ** *** * ****** * * *** * consensus_1483#0 GGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATT 360 consensus_1483#1 GGCGCCCTCTCGAAGA-AGTACCGACAGCAGCCGAAACAACGGCGT-ACCAACAAAAAGG 107 *** * ** * * ** * ** * **** * * * ** * * consensus_1483#0 TGGGGACGATC--AACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTT--GGTG 416 consensus_1483#1 GAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTT-TTACGAGTGGCTTCCCAGTTG 166 * ** * * ** *** * *** ** * * * * *** * * * ** consensus_1483#0 GC-GCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTG 475 consensus_1483#1 ACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAG 226 * * ** * *** * * *** * *** * * ** *** * ** * consensus_1483#0 --GGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAAT 533 consensus_1483#1 ATGTCAAAGGTACCGTAAAAAGGGCAGCAAGA---ACACAGCTCGGGACCATAGGGGACC 283 * *** *** * * * * * * *** *** ** ** ** * * * consensus_1483#0 GGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACA 593 consensus_1483#1 A---CCAAGAGAACCGCGCTGCCAGTTTATTTTCT------------------------- 315 ** ** * * * *** ** ** consensus_1483#0 GAGGAAACGTGTATAGAACTCAG 616 consensus_1483#1 ----------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |