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Takifugu rubripes
cluster # 1483 cluster # 1483       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1483#0 length = 616 sequences # 1  
consensus_1483#1 length = 315 sequences # 2  

consensusID : consensus_1483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGGATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATCAGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCCTCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAGCAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCCGGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATTTGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAACGTGTATAGAACTCAG]

[+] EMBL BU804819             [GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGGATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATCAGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCCTCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAGCAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCCGGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATTTGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAACGTGTATAGAACTCAG]


>consensus_1483#0 GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGG ATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATC AGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCC TCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAG CAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCC GGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATT TGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGC CTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAA CGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCC AGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAA CGTGTATAGAACTCAG



consensusID : consensus_1483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 315
fasta sequence
                              [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT]

[+] EMBL FR0058088            [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT]
[+] EMBL FR0058242            [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT]


>consensus_1483#1 TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTC GAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGA AAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACT TGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACC GTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCT GCCAGTTTATTTTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1483#0      GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGG 60
consensus_1483#1      ------------------------------------------------------------
                                                                                  

consensus_1483#0      ATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATC 120
consensus_1483#1      ------------------------------------------------------------
                                                                                  

consensus_1483#0      AGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCC 180
consensus_1483#1      ------------------------------------------------------------
                                                                                  

consensus_1483#0      TCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAG 240
consensus_1483#1      ------------------------------------------------------------
                                                                                  

consensus_1483#0      CAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCC 300
consensus_1483#1      -----------TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTC 49
                                 * * **    ***     *  ******  *      *       *** *

consensus_1483#0      GGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATT 360
consensus_1483#1      GGCGCCCTCTCGAAGA-AGTACCGACAGCAGCCGAAACAACGGCGT-ACCAACAAAAAGG 107
                      ***   *  ** *  * ** * **  *   **** *       * *  ** *     *  

consensus_1483#0      TGGGGACGATC--AACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTT--GGTG 416
consensus_1483#1      GAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTT-TTACGAGTGGCTTCCCAGTTG 166
                        * **  * *  ** *** *  ***  **  *    * * * ***  *  *    * **

consensus_1483#0      GC-GCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTG 475
consensus_1483#1      ACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAG 226
                       * * ** * ***  *    *     ***  *    ***  *  *  ** *** * ** *

consensus_1483#0      --GGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAAT 533
consensus_1483#1      ATGTCAAAGGTACCGTAAAAAGGGCAGCAAGA---ACACAGCTCGGGACCATAGGGGACC 283
                        * *** *** * *  *  *   * *  ***   *** **    ** **  * *  *  

consensus_1483#0      GGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACA 593
consensus_1483#1      A---CCAAGAGAACCGCGCTGCCAGTTTATTTTCT------------------------- 315
                          ** **    *   *    * *** **  **                          

consensus_1483#0      GAGGAAACGTGTATAGAACTCAG 616
consensus_1483#1      -----------------------
                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)