|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGGATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATCAGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCCTCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAGCAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCCGGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATTTGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAACGTGTATAGAACTCAG]
[+] EMBL BU804819 [GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGGATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATCAGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCCTCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAGCAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCCGGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATTTGGGGACGATCAACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTTGGTGGCGCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTGGGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAATGGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACAGAGGAAACGTGTATAGAACTCAG]
consensusID : consensus_1483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence
[TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT]
[+] EMBL FR0058088 [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT]
[+] EMBL FR0058242 [TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTCGGCGCCCTCTCGAAGAAGTACCGACAGCAGCCGAAACAACGGCGTACCAACAAAAAGGGAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTTTTACGAGTGGCTTCCCAGTTGACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAGATGTCAAAGGTACCGTAAAAAGGGCAGCAAGAACACAGCTCGGGACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1483#0 GACCATAGGGGACCACCAAGAGAACCGCGCTGCCAGTTTATTTTCTACATGTTTCTGTGG 60
consensus_1483#1 ------------------------------------------------------------
consensus_1483#0 ATGAAATGTCGCTGAGTTCGGGCGGTTGGACACGCACTTCTCCAGACTTCAGCGCGGATC 120
consensus_1483#1 ------------------------------------------------------------
consensus_1483#0 AGGCCGCCGCCCCGTCACATCATGAGGCCTCGGTATCTAAACACGGCTGTCAGACTGTCC 180
consensus_1483#1 ------------------------------------------------------------
consensus_1483#0 TCATGTCGGTGCCGGTGTCGGTGTGCCACTCCGGGATTCGGCCTCTCTGTCTACCCGGAG 240
consensus_1483#1 ------------------------------------------------------------
consensus_1483#0 CAGGCGACGAATCGCTGCGCCTGCAGCTCAGCATGGACCCTGGGAAGTCCGGGGATTTCC 300
consensus_1483#1 -----------TTGTTGTTTTTGCCCGGAATAATGGACTATTTCGCATGATATTGTTTTC 49
* * ** *** * ****** * * *** *
consensus_1483#0 GGCTTTCGATCCAGCACAGCAGCGGGACTGGCCGGACTGTGACCATTGCCGAGTTTGATT 360
consensus_1483#1 GGCGCCCTCTCGAAGA-AGTACCGACAGCAGCCGAAACAACGGCGT-ACCAACAAAAAGG 107
*** * ** * * ** * ** * **** * * * ** * *
consensus_1483#0 TGGGGACGATC--AACTACGAGGTGAAATCATCAAAGTGTCATGAGCTGAGTTT--GGTG 416
consensus_1483#1 GAGAGAAAAGCGAAAATACCACTTGAGCTCTACTTTTT-TTACGAGTGGCTTCCCAGTTG 166
* ** * * ** *** * *** ** * * * * *** * * * **
consensus_1483#0 GC-GCCTCCACACGAGCGCATCAGCTTCAACTTCCGCTGTGAGCAGGAAGCCCAGGGGTG 475
consensus_1483#1 ACAGACTACGCACTTGTTTCTTGTTGTCAGATGAGTCTGGTAAAAATAACCCCCGCGGAG 226
* * ** * *** * * *** * *** * * ** *** * ** *
consensus_1483#0 --GGCAACGGTGCTGACATCATCCCTGAGAGAGGCACAGAGAGTCGGCCCTCAAGATAAT 533
consensus_1483#1 ATGTCAAAGGTACCGTAAAAAGGGCAGCAAGA---ACACAGCTCGGGACCATAGGGGACC 283
* *** *** * * * * * * *** *** ** ** ** * * *
consensus_1483#0 GGTCCCCAGGATGCTCTGGACTCTGTTGATACTCAGAACATTTCATCTTTGCAAAGAACA 593
consensus_1483#1 A---CCAAGAGAACCGCGCTGCCAGTTTATTTTCT------------------------- 315
** ** * * * *** ** **
consensus_1483#0 GAGGAAACGTGTATAGAACTCAG 616
consensus_1483#1 -----------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |