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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence
[TATCCGAATCGTCAGAACATCTATATGACATATAGTTATGTACATAAATTAGAACGTAACAAATGACATGTATCTCTGATACCTACCTAGAATATTAATCATAAAAATTGCATTTGAATCCATCAGAGAAATGACATAGAAGAAAATTTTATTCTTCAAAAAAAAACAAGTTGGCACTCCGGTTCCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACGGGATTGAGCGGCCGGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTATTGCACCACAGACTCAAGTCCACCACACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGTTCTGAACTTCCTGCCCATTCTGAAATGGCTGCCATCCTACCCAGTCAAACAGTATTTGTTTTCTGATGTGGTCTCTGGTCTGAGCACAGGAGTTGTGCAGCTCCCACAAGGTCTCGCCTATGCAATGCTAGCTGCTGTGCCTCCTGTTTATGGTCTGTATTCCTCATTCTACCCAGTA]
[+] EMBL FR0060706 [TATCCGAATCGTCAGAACATCTATATGACATATAGTTATGTACATAAATTAGAACGTAACAAATGACATGTATCTCTGATACCTACCTAGAATATTAATCATAAAAATTGCATTTGAATCCATCAGAGAAATGACATAGAAGAAAATTTTATTCTTCAAAAAAAAACAAGTTGGCACTCCGGTTCCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACAGGATTGAGCGGCCGGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTATTGCACCACAGACTCAAGTCCACCACACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGTTCTGAACTTCCTGCCCATTCTGAAATGGCTGCCATCCTA ]
[+] EMBL BU807525 [ TATATGACATATAGTTATGTACATAAATTAGAACGTAACAAATGACATGTATCTCTGATACCTACCTAGAATATTAATCATAAAAATTGCATTTGAATCCATCAGAGAAATGACATAGAAGAAAATTTTATTCTTC AAAAAAAACAAGTTGGCACTCCGTTTTCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACGGGATTGAGCGGCCGGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTATTGCACCACAGACTCAAGTCCACCACACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGTTCTGAACTTCCTGCCCATTCTGAAATGGCTGCCATCCTACCCAGTCAAACAGTATTTGTTTTCTGATGTGGTCTCTGGTCTGAGCACAGGAGTTGTGCAGCTCCCACAAGGTCTCGCCTATGCAATGCTAGCTGCTGTGCCTCCTGTTTATGGTCTGTATTCCTCATTCTACCCAGTA]
consensusID : consensus_1488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[GTCTTTGGAAATTAAGCCGGCATCATCTTAAGAACGGAGCTGCGATTGCACCGAGATTGCATTTGAATCCATCAGAGAAATGACATAGAAGAAAATTTTATTCTTCAAAAAAAACAAGTTGGCACTCCGGTTCCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACAGGATTGAGCGGCCGGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTAATGCACCACAGACTCAAGTCCACCACACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGTTCTGAACTTCCTGCCCATTCTGAAATGGCTCCAT]
[+] EMBL FR0060215 [GTCTTTGGAAATTAAGCCGGCATCATCTTAAGAACGGAGCTGCGATTGCACCGAGATTGCATTTGAATCCATCAGAGAAATGACATAGAAGAAAATTTTATTCTTCAAAAAAAACAAGTTGGCACTCCGGTTCCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACAGGATTGAGCGGCCGGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTAATGCACCACAGACTCAAGTCCACCACACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGTTCTGAACTTCCTGCCCATTCTGAAATGGCTCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1488#0 TATCCGAATCGTCAGAACATCTATATGACATATAGTTATGTACATAAATTAGAACGTAAC 60
consensus_1488#1 ---------------------------------------------GTCTTTGGAAATTA- 14
** * * * *
consensus_1488#0 AAATGACATGTATCTCTGATACCTACCTAGAATATTAATCATAAAAATTGCATTTGAATC 120
consensus_1488#1 AGCCGGCAT-CATCTTAAGAACGGAGCTGCGATTG----CACCGAGATTGCATTTGAATC 69
* * *** **** ** * ** ** ** * **************
consensus_1488#0 CATCAGAGAAATGACATAGAAGAAAATTTTATTCTTCAAAAAAAAACAAGTTGGCACTCC 180
consensus_1488#1 CATCAGAGAAATGACATAGAAGAAAATTTTATTCTTCAAAAAAAA-CAAGTTGGCACTCC 128
********************************************* **************
consensus_1488#0 GGTTCCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACGGGATTGAGCGGCC 240
consensus_1488#1 GGTTCCTGCTATGGAAGAAGAGGATTCAGAATCTCAGTTGATGTACAGGATTGAGCGGCC 188
********************************************** *************
consensus_1488#0 GGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTATTGCACCACAGACTCAAGTCCACCAC 300
consensus_1488#1 GGTTTATGATGAAGCTTTCCTCCGGTCGCAGCTAATGCACCACAGACTCAAGTCCACCAC 248
********************************** *************************
consensus_1488#0 ACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGT 360
consensus_1488#1 ACTCTGGAAGAGGCTTCTTAAACATTTCCAGTGCTCTTCAGAGAAGGCTAAAGCAACAGT 308
************************************************************
consensus_1488#0 TCTGAACTTCCTGCCCATTCTGAAATGGCTGCCATCCTACCCAGTCAAACAGTATTTGTT 420
consensus_1488#1 TCTGAACTTCCTGCCCATTCTGAAATGGCT-CCAT------------------------- 342
****************************** ****
consensus_1488#0 TTCTGATGTGGTCTCTGGTCTGAGCACAGGAGTTGTGCAGCTCCCACAAGGTCTCGCCTA 480
consensus_1488#1 ------------------------------------------------------------
consensus_1488#0 TGCAATGCTAGCTGCTGTGCCTCCTGTTTATGGTCTGTATTCCTCATTCTACCCAGTA 538
consensus_1488#1 ----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |