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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[CCCTAGAGGCGCGTTGGAAACATGGATTCTGCTCATCACATTCCCTTGATAATTTGTCATGTATGGAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGGCCTAAACCGACGATGTACTTTGGATCAATTTGCAAATACAACAACGTTTACTACCTGGATGACCAAGAGTGTGCTCAGAAATATGGAAAAATATGGGGCACCTATGAGCTGAGGAACCCCATGCTGGTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTCACCAACCGGCGGGTGCGGAGATCAACACGGAACACAACTGAAGCGCAGTGAAAACATTAAATAAAACTGGAAATTCGGACACTATAAAGTGAAAGTTTCTATCAACACAAAGTGATCGGAGGGTTTCTTGGACCTCATTCCAGCTGGTTTTTGTTTGGTTTGTTTCAGAACTTCTGTCTGAACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGGAACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAGCGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATCAGTATTAAAGAGTAAACGTGACAGCAAACACAATACTCCTTTACAAATAATAAAATACACCTTTTTTGTTCACACTTCCATTAAAAAA]
[+] EMBL CA588413 [CCCTAGAGGCGCGTTGGAAACATGGATTCTGCTCATCACATTCCCTTGATAATTTGTCATGTATGGAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGGCCTAAACCGACGATGTACTTTGGATCAATTTGCAAATACAACAACGTTTACTACCTGGATGACCAAGAGTGTGCTCAGAAATATGGAAAAATATGGGGCACCTATGAGCTGAGGAACCCCATGCTGGTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTCACCAACCGGCGGGTGCGGAGATCAACACGGAACACAACTGAAGCGCAGTGAAAACATTAAATAAAACTGGAAATTCGGACACTATAAAGTGAAAGTTTCTATCAACACAAAGTGATCGGAGGGTTTCTTGGACCTCATTCCAGCTGGTTTTTGTTTGGTTTGTTTCAGAACTTCTGTCTGAACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGGAACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAGCGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATCAGTATTAAAGAGTAAACGTGACAGCAAACACAATACTCCTTTACAAATAATAAAATACACCTTTTTTGTTCACACTTCCATTAAAAAA]
consensusID : consensus_1489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[TCCCCTTGTTCGCGTTGGAAACATGCGACTCTGCTCATCACATTTACCTGCTTATTTGGCATGTATAGGAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGGAACTAAACCGACGATGCACTTTGGATCAATTTGCAAATACAACAACGTTTACTACCTGGATGACCAAGAGTGTGCTCAGAAATATGTGAAAAATATGGGGCACCTATGAGCTGAGGAAGCCCATGCTGGTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTCACCAACCGGCGGAACTTCTGTCTGAACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGGAACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAGCGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATCGGTATTAAAGACTTTTTTGGTGCCTACAACATGAACGTAGCCACGGGCGTCTTGTTCGGCATGGAAATGGAGCCGAGCCTCCCCATTAAACACGCCTCAAAGCTGTTCAAATTCCCCATT]
[+] EMBL CA589923 [TCCCCTTGTTCGCGTTGGAAACATG GATTCTGCTCATCACATTTACCTGCTTATTTGTCATGTAT GGAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGG CCTAAACCGACGATGTACTTTGGATCAATTTGCAAATACAACAACGTTTACTACCTGGATGACCAAGAGTGTGCTCAGAAATATG GAAAAATATGGGGCACCTATGAGCTGAGGAAGCCCATGCTGGTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTCACCAACCGGCGGAACTTCTGTCTGAACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGGAACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAGCGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATCGGTATTAAAGACTTTTTTGGTGCCTACAACATGAACGTAGCCACGGGCGTCTTGTTCGGCATGGAAATGGAGCCGAGCCTCCCCATTAAACACGCCTCAAAGCTGTTCAAATTCCCCATT]
[+] EMBL CA589761 [ CCCTTGTTCGCGTTGGAATTATGCCCCTCTGCTCATCACATTTACCTGCTTATTTGGCATGTATAGTAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGGAACTAAACCGACGATGCACTTTGGATCAATTTGCAAATACTACAACGTTTACTACCTGGATGACCAAGAGTGTGCTCAGAAATATGTGAAAAATATGGGGCACCTATGAGCTGAAGAAGCCCATGCTGGTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTCACCAACCGGCGGAACTTCTGTCTGAACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGGAACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAGCGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATCAGTATTAAAGACTTTTTTGGTGCCTACAACATGAACGTAGCCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1489#0 -CCCTAGAGGCGCGTTGGAAACATG-GATTCTGCTCATCACATTCCCTTGATAATTTGTC 58
consensus_1489#1 TCCCCTTGTTCGCGTTGGAAACATGCGACTCTGCTCATCACATTTACCTGCTTATTTGGC 60
*** *************** ** *************** * ** * ***** *
consensus_1489#0 ATGTAT-GGAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGGC-CTAAAC 116
consensus_1489#1 ATGTATAGGAAAGAGGACTTTTGGAATATTTGAGAAACTTGGAATCTCGGGGAACTAAAC 120
****** ********************************************* ******
consensus_1489#0 CGACGATGTACTTTGGATCAATTTGCAAATACAACAACGTTTACTACCTGGATGACCAAG 176
consensus_1489#1 CGACGATGCACTTTGGATCAATTTGCAAATACAACAACGTTTACTACCTGGATGACCAAG 180
******** ***************************************************
consensus_1489#0 AGTGTGCTCAGAAATATG-GAAAAATATGGGGCACCTATGAGCTGAGGAACCCCATGCTG 235
consensus_1489#1 AGTGTGCTCAGAAATATGTGAAAAATATGGGGCACCTATGAGCTGAGGAAGCCCATGCTG 240
****************** ******************************* *********
consensus_1489#0 GTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTC 295
consensus_1489#1 GTTGTGATGGACCCTGACCTGTTGAAGACCATCCTGGTGAAAGAGTGTTTCACACACTTC 300
************************************************************
consensus_1489#0 ACCAACCGGCGGGTGCGGAGATCAACACGGAACACAACTGAAGCGCAGTGAAAACATTAA 355
consensus_1489#1 ACCAACCGGCGG------------------------------------------------ 312
************
consensus_1489#0 ATAAAACTGGAAATTCGGACACTATAAAGTGAAAGTTTCTATCAACACAAAGTGATCGGA 415
consensus_1489#1 ------------------------------------------------------------
consensus_1489#0 GGGTTTCTTGGACCTCATTCCAGCTGGTTTTTGTTTGGTTTGTTTCAGAACTTCTGTCTG 475
consensus_1489#1 ------------------------------------------------AACTTCTGTCTG 324
************
consensus_1489#0 AACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGG 535
consensus_1489#1 AACGGAGATTTATACGATGCCGTTAACATCGCCGAGGACGATGACTGGAGGCGCATCCGG 384
************************************************************
consensus_1489#0 AACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAG 595
consensus_1489#1 AACGTCCTCAGCCCTCTCTTCACCACCGGGCGTATAAAACAGATCTTTAGTCTCATGAAG 444
************************************************************
consensus_1489#0 CGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATC 655
consensus_1489#1 CGTCAAAGCAGCAAACTGACCAGTAGCTTGGAGCCCAAAGCTGAAAATGAAGAAATCATC 504
************************************************************
consensus_1489#0 AGTATTAAAGAGTA-------------AACGTGACAGCAAACACAATACTCCTTTACAA- 701
consensus_1489#1 GGTATTAAAGACTTTTTTGGTGCCTACAACATGAACGTAGCCACGGGCGTCTTGTTCGGC 564
********** * *** *** * * *** ** * * *
consensus_1489#0 ---ATAATAAAATACACCTTTTTTGTTCACACTTCCATTAAAAAA--------------- 743
consensus_1489#1 ATGGAAATGGAGCCGAGCCTCCCCATT-AAACACGCCTCAAAGCTGTTCAAATTCCCCAT 623
*** * * * * ** * ** * * ***
consensus_1489#0 -
consensus_1489#1 T 624
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |