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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence
[GAAAGCAACCAATAATAGTCCCTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGTCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTTATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCTACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACTGCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCAGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATTAGGCAGGAGAAAATCTTTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCAGCTTCGGCAGGTCTGTGAAGACCAC]
[+] EMBL BU804801 [GAAAGCAACCAATAATAGTCCCTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGTCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTTATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCTACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAAC GCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGA ]
[+] EMBL CA588643 [ TAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTTATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCTACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACTTTTTTGTTACTGACAGGCATTATACAAGCTATTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCAGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATTAGGCAGGAGAAAATCTTTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCAGCTTCGGCAGGTCTGTGAAGACCAC]
consensusID : consensus_1492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[CTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGCCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACGCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCGGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATCAGGCAGTAGAAAATCTCTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCA]
[+] EMBL CA333219 [CTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGCCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACGCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCGGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATCAGGCAGTAGAAAATCTCTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1492#0 GAAAGCAACCAATAATAGTCCCTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCG 60
consensus_1492#1 ---------------------CTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCG 39
***************************************
consensus_1492#0 TTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGTCGACAAT 120
consensus_1492#1 TTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGCCGACAAT 99
**************************************************** *******
consensus_1492#0 GGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTG 180
consensus_1492#1 GGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTG 159
************************************************************
consensus_1492#0 AAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTT 240
consensus_1492#1 AAGTGCTTTAGCTGCAG------------------------------------------- 176
*****************
consensus_1492#0 ATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCT 300
consensus_1492#1 ------------------------------------------------------------
consensus_1492#0 ACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACTGCCGTGTCACTGACAG 360
consensus_1492#1 ---------CCTCCCAGCAAAAGACGGCTTTTTAAACCAAAAC-GCCGTGTCACTGACAG 226
********************************** ****************
consensus_1492#0 GCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGT 420
consensus_1492#1 GCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGT 286
************************************************************
consensus_1492#0 GTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAG 480
consensus_1492#1 GTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAG 346
************************************************************
consensus_1492#0 CTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTC 540
consensus_1492#1 CTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTC 406
************************************************************
consensus_1492#0 GACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACT 600
consensus_1492#1 GACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACT 466
************************************************************
consensus_1492#0 ATCAGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCA 660
consensus_1492#1 ATCGGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCA 526
*** ********************************************************
consensus_1492#0 GAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATTAGGCAGGAGAAAATCTTTG 720
consensus_1492#1 GAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATCAGGCAGTAGAAAATCTCTG 586
**************************************** ****** ********* **
consensus_1492#0 TTCGTATAAAGTCTCCCCAACACTGTACAAGCAGCTTCGGCAGGTCTGTGAAGACCAC 778
consensus_1492#1 TTCGTATAAAGTCTCCCCAACACTGTACAAGCA------------------------- 619
*********************************
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |