These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [TAGAATTTGGGAGAAAAAGGTGACCGTCACCACTTTCTACGCCATAGAAGAAGTGTGTCTCAGCAGACACCAAGAAAATCATCACCAAGAGGGCCCGGCAGCACCAGTGCGGCCTCAACACAGAACAGTACGGCCGCACGGTCCGACCAGGACACCTCGAAGTAATAGCACCGGGAGTTTTTGCTGTTTCTCTTCTGGCTAGTGCGGCTAAACTTCCATCACCCCTGGAAACATCACTGCATTTTCTCTTTTTCACCGGGTTCTCTTTTGTGCACAGCTGAAATTCCTTGCTTTTTCTGAGGTAGCCATAAGATTTTTTTGGTCAAAAAAGAGGTTTAAACCCATGTTGCTCTGCTGGTGGTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGACTTCAGCAGATGAGGAGGGGAGAACAACAGAGACAAACATGGCATGTCAGTTTCACCGTTTATTCATCAACACCTGAAACGTGGTACAAAGAAATTGAGTTCTGTCTGTCGGGACTGTCCTTTCATTCTTCTCGCCGCAGTGGTGTGTGAAAACACAAAAGTCAGGTGGTTTCTGAGAACTCCAGAGAGGCCTGGTGTGTCTGGTTGAAG] [+] EMBL CA846719 [TAGAATTTGGGAGAAAAAGGTGACCGTCACCACTTTCTACGCCATAGAAGAAGTGTGTCTCAGCAGACACCAAGAAAATCATCACCAAGAGGGCCCGGCAGCACCAGTGCGGCCTCAACACAGAACAGTACGGCCGCACGGTCCGACCAGGACACCTCGAAGTAATAGCACCGGGAGTTTTTGCTGTTTCTCTTCTGGCTAGTGCGGCTAAACTTCCATCACCCCTGGAAACATCACTGCATTTTCTCTTTTTCACCGGGTTCTCTTTTGTGCACAGCTGAAATTCCTTGCTTTTTCTGAGGTAGCCATAAGATTTTTTTGGTCAAAAAAGAGGTTTAAACCCATGTTGCTCTGCTGGTGGTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGACTTCAGCAGATGAGGAGGGGAGAACAACAGA ] [-] EMBL CA845311 [ TCTGCTGGTGGTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGACTTCAGCAGATGAGGAGGGGAGAACAACAGAGACAAACATGGCATGTCAGTTTCACCGTTTATTCATCAACACCTGAAACGTGGTACAAAGAAATTGAGTTCTGTCTGTCGGGACTGTCCTTTCATTCTTCTCGCCGCAGTGGTGTGTGAAAACACAAAAGTCAGGTGGTTTCTGAGAACTCCAGAGAGGCCTGGTGTGTCTGGTTGAAG] consensusID : consensus_1493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [GAGACACACTTCTTCTATGGCCTTGGTAGTGGTGACGGTCACCTTTTTCTCCCAAATTCTACTCTCCACTCCCTTCATTCACATTCCTGTTGTTTGTTTCTTTGTGTGAGTTTTCTTGACGAAATTGCAACCAGATTTTTTTTTTTCCTTTAACGTTTAGCAGGCCAATTGCACAGAAGGAGAGCCAGCAGCAAAGATTTTGTGTGAAGAGGCAGATTGAAGGACCCACAAGGGGGGAAACCCCCA] [+] EMBL FR0056430 [GAGACACACTTCTTCTATGGCCTTGGTAGTGGTGACGGTCACCTTTTTCTCCCAAATTCTACTCTCCACTCCCTTCATTCACATTCCTGTTGTTTGTTTCTTTGTGTGAGTTTTCTTGACGAAATTGCAACCAGATTTTTTTTTTTCCTTTAACGTTTAGCAGGCCAATTGCACAGAAGGAGAGCCAGCAGCAAAGATTTTGTGTGAAGAGGCAGATTGAAGGACCCACAAGGGGGGAAACCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1493#0 TAGAATTTGGGAGAAAAAGGTGACCGTCACCACTTTCTACGCCATAGAAGAAGTGTGTCT 60 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 CAGCAGACACCAAGAAAATCATCACCAAGAGGGCCCGGCAGCACCAGTGCGGCCTCAACA 120 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 CAGAACAGTACGGCCGCACGGTCCGACCAGGACACCTCGAAGTAATAGCACCGGGAGTTT 180 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 TTGCTGTTTCTCTTCTGGCTAGTGCGGCTAAACTTCCATCACCCCTGGAAACATCACTGC 240 consensus_1493#1 ------------------------GAGACACACTTCTTCTATGGCCTTGGTAGTGGTGAC 36 * * ***** * * * * consensus_1493#0 ATTTTCTCTTTTTCACCGGGTTCTCTTTTGTGCACAGCTGAAATTCCTTGCTTTTTCTGA 300 consensus_1493#1 GGTCACCTTTTTCTCCCAAATTCTACTCTCCACTCCCTTCATTCACATTCCTGTTGTTTG 96 * * **** ** **** * * * * * * * ** ** ** * consensus_1493#0 GGTAGCCATAAGATTTTTTTGGTCAAAAAAGAGGTTTAAACCCATGTTGCTCTGCTGGTG 360 consensus_1493#1 TTTCTTTGTGTGAGTTTTCTTGACGAAATTGCAACC-AGATTTTTTTTTTTCCTTTAACG 155 * * ** **** * * * *** * * * * ** ** * * consensus_1493#0 GTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGA 420 consensus_1493#1 --TTTAGCA----------GGCCAATTGCACAGAAGGAGAGC-----CAGCAG-CAAAGA 197 **** * ** * *** *** * ** *** ** *** *** ** consensus_1493#0 CTTCAGCAGATGAGGAGGGGAGAACAACAGAGACAAACATGGCATGTCAGTTTCACCGTT 480 consensus_1493#1 TTTTGTGTGAAGAGGCAGATTGAA------GGACCCACAAGGGGGGAAACCCCCA----- 246 ** ** **** * *** *** *** ** * * ** consensus_1493#0 TATTCATCAACACCTGAAACGTGGTACAAAGAAATTGAGTTCTGTCTGTCGGGACTGTCC 540 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 TTTCATTCTTCTCGCCGCAGTGGTGTGTGAAAACACAAAAGTCAGGTGGTTTCTGAGAAC 600 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 TCCAGAGAGGCCTGGTGTGTCTGGTTGAAG 630 consensus_1493#1 ------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |