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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[TAGAATTTGGGAGAAAAAGGTGACCGTCACCACTTTCTACGCCATAGAAGAAGTGTGTCTCAGCAGACACCAAGAAAATCATCACCAAGAGGGCCCGGCAGCACCAGTGCGGCCTCAACACAGAACAGTACGGCCGCACGGTCCGACCAGGACACCTCGAAGTAATAGCACCGGGAGTTTTTGCTGTTTCTCTTCTGGCTAGTGCGGCTAAACTTCCATCACCCCTGGAAACATCACTGCATTTTCTCTTTTTCACCGGGTTCTCTTTTGTGCACAGCTGAAATTCCTTGCTTTTTCTGAGGTAGCCATAAGATTTTTTTGGTCAAAAAAGAGGTTTAAACCCATGTTGCTCTGCTGGTGGTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGACTTCAGCAGATGAGGAGGGGAGAACAACAGAGACAAACATGGCATGTCAGTTTCACCGTTTATTCATCAACACCTGAAACGTGGTACAAAGAAATTGAGTTCTGTCTGTCGGGACTGTCCTTTCATTCTTCTCGCCGCAGTGGTGTGTGAAAACACAAAAGTCAGGTGGTTTCTGAGAACTCCAGAGAGGCCTGGTGTGTCTGGTTGAAG]
[+] EMBL CA846719 [TAGAATTTGGGAGAAAAAGGTGACCGTCACCACTTTCTACGCCATAGAAGAAGTGTGTCTCAGCAGACACCAAGAAAATCATCACCAAGAGGGCCCGGCAGCACCAGTGCGGCCTCAACACAGAACAGTACGGCCGCACGGTCCGACCAGGACACCTCGAAGTAATAGCACCGGGAGTTTTTGCTGTTTCTCTTCTGGCTAGTGCGGCTAAACTTCCATCACCCCTGGAAACATCACTGCATTTTCTCTTTTTCACCGGGTTCTCTTTTGTGCACAGCTGAAATTCCTTGCTTTTTCTGAGGTAGCCATAAGATTTTTTTGGTCAAAAAAGAGGTTTAAACCCATGTTGCTCTGCTGGTGGTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGACTTCAGCAGATGAGGAGGGGAGAACAACAGA ]
[-] EMBL CA845311 [ TCTGCTGGTGGTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGACTTCAGCAGATGAGGAGGGGAGAACAACAGAGACAAACATGGCATGTCAGTTTCACCGTTTATTCATCAACACCTGAAACGTGGTACAAAGAAATTGAGTTCTGTCTGTCGGGACTGTCCTTTCATTCTTCTCGCCGCAGTGGTGTGTGAAAACACAAAAGTCAGGTGGTTTCTGAGAACTCCAGAGAGGCCTGGTGTGTCTGGTTGAAG]
consensusID : consensus_1493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[GAGACACACTTCTTCTATGGCCTTGGTAGTGGTGACGGTCACCTTTTTCTCCCAAATTCTACTCTCCACTCCCTTCATTCACATTCCTGTTGTTTGTTTCTTTGTGTGAGTTTTCTTGACGAAATTGCAACCAGATTTTTTTTTTTCCTTTAACGTTTAGCAGGCCAATTGCACAGAAGGAGAGCCAGCAGCAAAGATTTTGTGTGAAGAGGCAGATTGAAGGACCCACAAGGGGGGAAACCCCCA]
[+] EMBL FR0056430 [GAGACACACTTCTTCTATGGCCTTGGTAGTGGTGACGGTCACCTTTTTCTCCCAAATTCTACTCTCCACTCCCTTCATTCACATTCCTGTTGTTTGTTTCTTTGTGTGAGTTTTCTTGACGAAATTGCAACCAGATTTTTTTTTTTCCTTTAACGTTTAGCAGGCCAATTGCACAGAAGGAGAGCCAGCAGCAAAGATTTTGTGTGAAGAGGCAGATTGAAGGACCCACAAGGGGGGAAACCCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1493#0 TAGAATTTGGGAGAAAAAGGTGACCGTCACCACTTTCTACGCCATAGAAGAAGTGTGTCT 60
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 CAGCAGACACCAAGAAAATCATCACCAAGAGGGCCCGGCAGCACCAGTGCGGCCTCAACA 120
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 CAGAACAGTACGGCCGCACGGTCCGACCAGGACACCTCGAAGTAATAGCACCGGGAGTTT 180
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 TTGCTGTTTCTCTTCTGGCTAGTGCGGCTAAACTTCCATCACCCCTGGAAACATCACTGC 240
consensus_1493#1 ------------------------GAGACACACTTCTTCTATGGCCTTGGTAGTGGTGAC 36
* * ***** * * * *
consensus_1493#0 ATTTTCTCTTTTTCACCGGGTTCTCTTTTGTGCACAGCTGAAATTCCTTGCTTTTTCTGA 300
consensus_1493#1 GGTCACCTTTTTCTCCCAAATTCTACTCTCCACTCCCTTCATTCACATTCCTGTTGTTTG 96
* * **** ** **** * * * * * * * ** ** ** *
consensus_1493#0 GGTAGCCATAAGATTTTTTTGGTCAAAAAAGAGGTTTAAACCCATGTTGCTCTGCTGGTG 360
consensus_1493#1 TTTCTTTGTGTGAGTTTTCTTGACGAAATTGCAACC-AGATTTTTTTTTTTCCTTTAACG 155
* * ** **** * * * *** * * * * ** ** * *
consensus_1493#0 GTTTTAATACAACTGTGGCGGAAAGTTGAACAACAAGAAAGCGACCACAACAGACAAGGA 420
consensus_1493#1 --TTTAGCA----------GGCCAATTGCACAGAAGGAGAGC-----CAGCAG-CAAAGA 197
**** * ** * *** *** * ** *** ** *** *** **
consensus_1493#0 CTTCAGCAGATGAGGAGGGGAGAACAACAGAGACAAACATGGCATGTCAGTTTCACCGTT 480
consensus_1493#1 TTTTGTGTGAAGAGGCAGATTGAA------GGACCCACAAGGGGGGAAACCCCCA----- 246
** ** **** * *** *** *** ** * * **
consensus_1493#0 TATTCATCAACACCTGAAACGTGGTACAAAGAAATTGAGTTCTGTCTGTCGGGACTGTCC 540
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 TTTCATTCTTCTCGCCGCAGTGGTGTGTGAAAACACAAAAGTCAGGTGGTTTCTGAGAAC 600
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 TCCAGAGAGGCCTGGTGTGTCTGGTTGAAG 630
consensus_1493#1 ------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |