These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TGAACCATTACAGTATTTTGGAGCTGTCACTTAACCATTTGTAAAGGATAACCTGATCGATGTCTCATTTTATAATTTAACCGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGATTTGGGATACGGCAGGCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCAGAGAACTTCCCCTTTGTGGTTTTGGGTAATAAGATTGACTTGGAGAACAGACAGGTAACAACCAAGCGGGCACAGGCCTGGTGTCAGAGCAAGAACAACATCCCGTATTTTGAAACCAGCGCCAAGGAGGCGATCAACGTGGAGCAGGCCTTCCAGACCATTGCACGCAACGCCCTTAAACAGGAGACCGAAGTG] [+] EMBL CA589579 [TGAACCATTACAGTATTTTGGAGCTGTCACTTAACCATTTGTAAAGGATAACCTGATCGATGTCTCATTTTATAATTTAACCGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGATTTGGGATACGGCAGGCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCAGAGAACTTCCCCTTTGTGGTTTTGGGTAATAAGATTGACTTGGAGAACAGACAGGTAACAACCAAGCGGGCACAGGCCTGGTGTCAGAGCAAGAACAACATCCCGTATTTTGAAACCAGCGCCAAGGAGGCGATCAACGTGGAGCAGGCCTTCCAGACCATTGCACGCAACGCCCTTAAACAGGAGACCGAAGTG] consensusID : consensus_1499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [AGCTTGACAGGAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCAGACTAAATATCCCGTTGTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAGGCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATAGCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTTCTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGGTACTCGGGACACGGAAGGCAAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCA] [+] EMBL BU804787 [AGCTTGACAGGAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCAGACTAAATATCCCGTTGTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAGGCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATAGCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTTCTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAG ATTTGGGATACGGCAGGCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCA] [+] EMBL CA589353 [ GAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCTGACTACATATCCCGTTGTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAGGCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATAGCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTTCTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGGTACTCATGACACTGAAGTCACAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1499#0 ------------------------------------------------------------ consensus_1499#1 AGCTTGACAGGAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCAGACTAAATATCCCGTT 60 consensus_1499#0 ------------------------------------------------------------ consensus_1499#1 GTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAG 120 consensus_1499#0 ------------------------------------------------------------ consensus_1499#1 GCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATA 180 consensus_1499#0 ----TGAACCATTACAGTATTTTGGAGCTGTCACTTAACCATTTGTAAAGGATAACCTGA 56 consensus_1499#1 GCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTT-- 238 * * * * ** * *** ** * * * *** * ** * consensus_1499#0 TCGATGTCTCATTTTATAATTTAACCGT-----TGTGGGATAATGACATCAAGGAAGAAA 111 consensus_1499#1 CTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAA 298 *** * ** * * * ***** *************************** consensus_1499#0 GTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAAT 171 consensus_1499#1 GTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAAT 358 ************************************************************ consensus_1499#0 CAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTG 231 consensus_1499#1 CAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTG 418 ************************************************************ consensus_1499#0 ACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGAT--TTGGGATACGGCAG 289 consensus_1499#1 ACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGGTACTCGGGACACGGAAG 478 ****************************************** * * **** **** ** consensus_1499#0 GCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCC 349 consensus_1499#1 GCAAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCC 538 ** ********************************************************* consensus_1499#0 TGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGT 409 consensus_1499#1 TGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGT 598 ************************************************************ consensus_1499#0 TCTTGATCCAGGCCAGCCCTCGAGATCCAGAGAACTTCCCCTTTGTGGTTTTGGGTAATA 469 consensus_1499#1 TCTTGATCCAGGCCAGCCCTCGAGATCCA------------------------------- 627 ***************************** consensus_1499#0 AGATTGACTTGGAGAACAGACAGGTAACAACCAAGCGGGCACAGGCCTGGTGTCAGAGCA 529 consensus_1499#1 ------------------------------------------------------------ consensus_1499#0 AGAACAACATCCCGTATTTTGAAACCAGCGCCAAGGAGGCGATCAACGTGGAGCAGGCCT 589 consensus_1499#1 ------------------------------------------------------------ consensus_1499#0 TCCAGACCATTGCACGCAACGCCCTTAAACAGGAGACCGAAGTG 633 consensus_1499#1 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |